Skip to main content

Table 3 Comparison of biofilm to batch culture

From: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

DVU Gene #

Gene Name

Description

Log2ratio (z-score)

0429

ech F

Ech hydrogenase, putative subunit

3.41 (3.91)

0799

-

conserved hypothetical protein

3.02 (3.46)

2342

-

amino acid ABC transporter

2.34 (2.68)

1817

cyf

cytochrome c553

2.31 (2.64)

2781

-

hypothetical protein

2.30 (2.63)

0797

-

conserved hypothetical protein

2.15 (2.46)

0752

-

amino acid ABC transporter

1.95 (2.22)

0588

hyb A

formate dehydrogenase, beta subunit

1.94 (2.22)

A0108

-

-

1.87 (2.14)

2982

leu C

3-isopropoylmalate dehydratase

1.78 (2.03)

2333

ndk

nucleoside dephosphate kinase

1.77 (2.02)

0465

trp E

anthrnilate synthase, component I

-1.72 (-2.00)

1207

fab H

3-oxyacyl-acyl-carrier protein synthase

-1.72 (-2.00)

0107

gln H

glutamine periplasmic binding protein

-1.75 (-2.04)

1873

ppi B-2

peptidyl-prolyl-isomerase

-1.78 (-2.07)

0997

met F

5,10-methylenetetrahydrofolate red.

-1.79 (-2.09)

3029

pta

phosphate acetyltransferase

-1.87 (-2.17)

2449

met K

S-adenosylmethionen synthetase

-1.88 (-2.18)

0470

trp B-2

tryptophan synthase

-1.94 (-2.25)

1095

arg G

argininosuccinate synthase

-1.96 (-2.28)

0462

-

chorismate mutase

-1.99 (-2.31)

0607

ahc Y

adenosylhomocysteinase

-2.06 (-2.40)

2590

-

sensory box protein

-2.38 (-2.76)

1241

-

conserved hypothetical protein

-2.55 (-2.96)

3371

met E

S-methyltransferase

-2.83 (-3.28)

0494

-

aminotransferase V

-3.30 (-3.82)

  1. This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to batch, planktonic cells.