Skip to main content

Table 3 Comparison of biofilm to batch culture

From: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

DVU Gene # Gene Name Description Log2ratio (z-score)
0429 ech F Ech hydrogenase, putative subunit 3.41 (3.91)
0799 - conserved hypothetical protein 3.02 (3.46)
2342 - amino acid ABC transporter 2.34 (2.68)
1817 cyf cytochrome c553 2.31 (2.64)
2781 - hypothetical protein 2.30 (2.63)
0797 - conserved hypothetical protein 2.15 (2.46)
0752 - amino acid ABC transporter 1.95 (2.22)
0588 hyb A formate dehydrogenase, beta subunit 1.94 (2.22)
A0108 - - 1.87 (2.14)
2982 leu C 3-isopropoylmalate dehydratase 1.78 (2.03)
2333 ndk nucleoside dephosphate kinase 1.77 (2.02)
0465 trp E anthrnilate synthase, component I -1.72 (-2.00)
1207 fab H 3-oxyacyl-acyl-carrier protein synthase -1.72 (-2.00)
0107 gln H glutamine periplasmic binding protein -1.75 (-2.04)
1873 ppi B-2 peptidyl-prolyl-isomerase -1.78 (-2.07)
0997 met F 5,10-methylenetetrahydrofolate red. -1.79 (-2.09)
3029 pta phosphate acetyltransferase -1.87 (-2.17)
2449 met K S-adenosylmethionen synthetase -1.88 (-2.18)
0470 trp B-2 tryptophan synthase -1.94 (-2.25)
1095 arg G argininosuccinate synthase -1.96 (-2.28)
0462 - chorismate mutase -1.99 (-2.31)
0607 ahc Y adenosylhomocysteinase -2.06 (-2.40)
2590 - sensory box protein -2.38 (-2.76)
1241 - conserved hypothetical protein -2.55 (-2.96)
3371 met E S-methyltransferase -2.83 (-3.28)
0494 - aminotransferase V -3.30 (-3.82)
  1. This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to batch, planktonic cells.