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Table 4 Comparison of biofilm to reactor, planktonic culture

From: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

DVU Gene # Gene Name Description Log2ratio (z-score)
0799 - - 3.65 (4.78)
0797 - - 3.08 (4.02)
0587 fdn G-1 formate dehydrogenase, alpha subunit 2.59 (3.38)
1817 cyf cytochrome c553 2.44 (3.18)
2135 - hypothetical protein 2.39 (3.11)
2442 - Hsp family 2.30 (2.99)
0251 - putative membrane protein 2.20 (2.86)
0588 hyb A formate dehydrogenase, beta subunit 2.11 (2.74)
2410 sod B superoxide dismutase, Fe 2.02 (2.63)
2100 - universal stress protien 1.85 (2.40)
A0115 - - 1.81 (2.34)
2543 b0873 hybrid cluster protein 1.80 (2.34)
0429 ech F EchF 1.75 (2.27)
0430 ech E EchE 1.66 (2.15)
2441 hsp C Hsp20 family 1.63 (2.10)
1067 - Bmp family membrane protein 1.60 (2.07)
1876 dna J DnaJ 1.56 (2.02)
0467 trp D anthrnilate phosphoribosyltransferase -1.52 (-2.06)
0415 pep A cytosol aminopeptidase -1.55 (-2.10)
3027 glc D glycolate oxidase -1.80 (-2.43)
2590 - sensory box protein -1.81 (-2.44)
0494 - aminotransferase V -1.82 (-2.47)
1257 - RNA-binding protein -2.00 (-2.69)
0318 - TPR domain protein -2.23 (-3.00)
  1. This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to reactor, planktonic cells.
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