From: Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation
Strain | Contigs/ Scaffolds | Genome Size (bp) | N50 (bp) | Complete/Partial ORFs (% Partial)a | Ref.; NCBI project accession number |
---|---|---|---|---|---|
S. albus J1074 | 501/2 | 6,619,469 | 23,675 | 5442/575 (9.6) | The Broad Institute, unpublished; PRJNA37045 |
S. avermitilis MA-4680 | Complete | 9,119,895 | - | 7676/0 (0) | |
S. bingchenggensis BCW-1 | Complete | 11,936,683 | - | 10035/0 (0) | [27]; PRJNA35119 |
S. clavuligerus ATCC27064 (#1) | 279/2 | 8,528,397 | 50,310 | 6893/186 (2.6) | [28]; PRJNA42475 |
S. clavuligerus ATCC27064 (#2) | 597/158 | 6,729,086 | 16,887 | 5692/430 (7.0) | The Broad Institute, unpublished; PRJNA28551 |
S. clavuligerus ATCC27064 (#3) | 89/5 | 9,134,976 | 203,387 | 7567/58 (0.8) | [21]; PRJNA19249 |
S. coelicolor A3(2) | Complete | 9,054,847 | - | 8153/0 (0) | [29]; PRJNA35153 |
S. flavogriseus ATCC33331 | Complete | 7,656,104 | - | 6763/0 (0) | The Joint Genome Institute, unpublished; PRJNA37207 |
S. ghanaensis ATCC14672 | 616/3 | 8,223,278 | 24,170 | 7166/649 (8.3) | The Broad Institute, unpublished; PRJNA37041 |
S. griseoflavus Tu4000 | 927/1 | 7,364,052 | 14,024 | 6076/1187 (16.3) | The Broad Institute, unpublished; PRJNA37185 |
S. griseus subsp. griseus NBRC13350 | Complete | 8,545,929 | - | 7136/0 (0) | [30]; PRJNA36231 |
S. griseus XylebKG-1 | 4/2 | 8,731,583 | 603,0272 | 7374/5 (0.1) | [31]; PRJNA38545 |
S. hygroscopicus ATCC53653 | 783/2 | 10,466,286 | 27,794 | 8647/1092 (11.2) | The Broad Institute, unpublished; PRJNA37181 |
S. lividans TK24 | 333/1 | 8,190,887 | 49,556 | 7183/419 (5.5) | The Broad Institute, unpublished; PRJNA37179 |
S. pristinaespiralis ATCC25486 | 844/1 | 7,633,609 | 17,558 | 6283/1000 (13.7) | The Broad Institute, unpublished; PRJNA36845 |
S. roseosporus NRRL11379 | 280/2 | 7,763,119 | 57,471 | 6737/394 (5.5) | The Broad Institute, unpublished; PRJNA65085 |
S. roseosporus NRRL15998 | 371/1 | 7,560,086 | 38,584 | 6493/462 (6.6) | The Broad Institute, unpublished; PRJNA55545 |
S. scabiei 87-22 | Complete | 10,148,695 | - | 8746/0 (0) | Wellcome Trust Sanger Institute, unpublished; PRJNA35395 |
Streptomyces sp. C | 652/4 | 7,916,041 | 25,608 | 6906/815 (10.6) | The Broad Institute, unpublished; PRJNA37177 |
Streptomyces sp. e14 | 716/13 | 7,146,196 | 21,378 | 5780/893 (13.4) | The Broad Institute, unpublished; PRJNA38087 |
Streptomyces sp. Mg1 | 466/127 | 7,105,723 | 25,079 | 6344/384 (5.7) | The Broad Institute, unpublished; PRJNA36841 |
Streptomyces sp. PP-C42 | 7074/- | 6,467,850 | 1,414 | 2503/8392 (77.0) | [16]; PRJNA63125 |
Streptomyces sp. SPB74 | 845/2 | 6,505,970 | 13,132 | 5401/917 (14.5) | The Broad Institute, unpublished; PRJNA36843 |
Streptomyces sp. SPB78 | 694/4 | 6,897,976 | 20,678 | 5723/853 (13.0) | The Broad Institute, unpublished; PRJNA37173 |
S. sviceus ATCC29083 | 552/1 | 9,055,790 | 33,523 | 7921/711 (8.2) | The Broad Institute, unpublished; PRJNA36847 |
S. viridochromogenes DSM40736 | 226/1 | 10,988,130 | 109,490 | 7473/328 (4.2) | The Broad Institute, unpublished; PRJNA37183 |