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Table 2 Tissue specificity of differentially expressed gene profiles

From: Meta-analysis of Chicken – Salmonella infection experiments

  Experiment (e)   (et)    Time (t)   
Tissue N FE Benjamini FDR N FE Benjamini FDR N FE Benjamini FDR
Epithelium 636 1.56 1.50E-34 4.99E-34 616 1.56 1.36E-32 4.54E-32 682 1.53 1.20E-34 3.92E-34
Liver 476 1.48 2.68E-19 1.79E-18 464 1.48 7.21E-19 4.82E-18 516 1.46 2.04E-20 1.33E-19
Brain 1443 1.17 4.35E-16 4.36E-15 1400 1.17 1.55E-14 1.55E-13 1566 1.16 5.17E-16 5.07E-15
Skin 360 1.28 6.81E-06 1.59E-04 351 1.28 8.22E-06 1.92E-04 392 1.28 2.63E-06 6.02E-05
Lymph 152 1.46 3.10E-05 8.28E-04 148 1.47 4.44E-05 0.001 157 1.38 3.98E-04 0.016
Bone marrow 160 1.41 1.76E-04 0.005 158 1.43 8.78E-05 0.003 178 1.43 1.45E-05 0.000
Muscle 170 1.34 0.001 0.049 167 1.35 9.43E-04 0.035 189 1.36 1.46E-04 0.005
Cajal-Retzius cell 53 1.75 0.001 0.056 52 1.77 0.001 0.055 56 1.69 0.002 0.079
Skeletal muscle 123 1.38 0.003 0.170 122 1.41 0.002 0.079 141 1.45 0.000 0.004
Colon 229 1.25 0.003 0.179 224 1.26 0.003 0.157 238 1.19 0.035 2.520
Fetal brain cortex 55 1.65 0.004 0.208 54 1.67 0.004 0.196 59 1.62 0.004 0.181
Heart 119 1.34 0.013 0.791 112 1.29 0.043 3.784 130 1.34 0.008 0.433
Renal cell carcinoma 21 2.17 0.017 1.111 21 2.23 0.013 0.777 21 1.99 0.042 3.417
Lung 453 1.13 0.030 2.239 447 1.15 0.013 0.811 504 1.15 0.005 0.249
Hepatoma 54 1.49 0.038 2.953 54 1.54 0.023 1.605 59 1.49 0.026 1.717
Embryonal rhabdomyosarcoma 9 3.34 0.043 3.425 9 3.43 0.036 2.866     
Kidney      265 1.18 0.034 2.526 300 1.19 0.013 0.767
Fetal liver      48 1.53 0.042 3.529     
Teratocarcinoma          120 1.29 0.034 2.585
Aorta          36 1.66 0.035 2.768
  1. To investigate cell types and tissues related to the differentially expressed gene profiles the DAVID software compared the lists of differentially expressed genes with normal physiologic expression of tissue-specific gene profiles. N is the number of differently expressed genes found in a tissue, FE is Fold Enrichment, Benjamini is the P-value after correction for multiple testing, and FDR is False Discovery rate.
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