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Table 2 Distribution of BLASTx top-hit species of Paradoxornis webbianus bulomachus contigs with a similarity of > 90% and an alignment length of > 200 amino acid residues to their best-hit sequences

From: Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves)

Category Species

Reference-guided assembly

  
 

Zebra Finch

Chicken

De novo assembly

Total

 

No. of contigs (%)

No. of contigs (%)

No. of contigs (%)

No. of contigs (%)

Aves

6159 (83.53)

27 (0.35)

936 (12.03)

7122 (91.55)

Taeniopygia guttata

5141 (66.09)

 

401 (5.15)

5542 (71.24)

Gallus gallus

726 (9.33)

20 (0.26)

485 (6.23)

1231 (15.82)

Meleagris gallopavo

257 (3.30)

6 (0.08)

38 (0.49)

301 (3.87)

Zonotrichia albicollis

20 (0.26)

1 (0.01)

5 (0.06)

26 (0.33)

Coturnix coturnix

5 (0.06)

 

3 (0.04)

7 (0.09)

Other avian species1

10 (0.13)

 

4 (0.05)

15 (0.19)

Mammals

165 (2.12)

4 (0.05)

316 (4.06)

485 (6.23)

Monodelphis domestica

27 (0.35)

 

67 (0.86)

94 (1.21)

Homo sapiens

28 (0.36)

2 (0.03)

26 (0.33)

56 (0.72)

Mus musculus

22 (0.28)

 

33 (0.42)

55 (0.71)

Ailuropoda melanoleuca

6 (0.08)

 

27 (0.35)

33 (0.42)

Ornithorhynchus anatinus

10 (0.13)

 

22 (0.28)

32 (0.41)

Equus caballus

5 (0.06)

 

22 (0.28)

27 (0.35)

Bos taurus

5 (0.06)

 

20 (0.26)

25 (0.32)

Sus scrofa

3 (0.04)

 

16 (0.21)

19 (0.24)

Macaca mulatta

5 (0.06)

 

13 (0.17)

18 (0.23)

Rattus norvegicus

4 (0.05)

 

14 (0.18)

18 (0.23)

Oryctolagus cuniculus

2 (0.03)

 

13 (0.17)

15 (0.19)

Pongo abelii

4 (0.05)

 

9 (0.12)

13 (0.17)

Callithrix jacchus

5 (0.06)

 

8 (0.10)

13 (0.17)

Loxodonta africana

7 (0.09)

1 (0.01)

2 (0.03)

10 (0.13)

Canis familiaris

1 (0.01)

 

9 (0.12)

10 (0.13)

Cricetulus griseus

5 (0.06)

 

3 (0.04)

8 (0.10)

Other mammalspecies2

26 (0.33)

1 (0.01)

12 (0.15)

39 (0.50)

Reptiles

19 (0.24)

 

32 (0.41)

51 (0.66)

Anolis carolinensis

8 (0.23)

 

28 (0.36)

46 (0.59)

Other reptile species3

1 (0.01)

 

4 (0.05)

5 (0.06)

Amphibians

10 (0.13)

 

19 (0.24)

29 (0.37)

Xenopus tropicalis

7 (0.09)

 

15 (0.19)

22 (0.28)

Xenopus laevis

3 (0.04)

 

4 (0.05)

7 (0.09)

Fish

6 (0.08)

 

8 (0.10)

14 (0.18)

Danio rerio

  

5 (0.06)

5 (0.06)

Tetraodon nigroviridis

1 (0.01)

 

2 (0.03)

3 (0.04)

Salmo salar

1 (0.01)

 

1 (0.01)

2 (0.03)

Cyprinus carpio

3 (0.04)

  

3 (0.04)

Insect

    

Danaus plexippus

1 (0.01)

  

1 (0.01)

Protozoa

  

38 (0.49)

38 (0.49)

Trichomonas vaginalis

  

38 (0.49)

38 (0.49)

Plants

  

36 (0.46)

36 (0.46)

Zea mays

  

33 (0.42)

33 (0.42)

Other plant species4

  

3 (0.04)

3 (0.04)

Others 5

  

4 (0.05)

4 (0.05)

Total

6359 (87.75)

31 (0.40)

1389 (17.86)

7779 (100)

  1. Totals for each category are in bold.
  2. 1 Other avian species included Anas platyrhynchos, Anser anser, Columba livia, Dromaius novaehollandiae, Lonchura striata, and Struthio camelus.
  3. 2 Other mammal species included Cavia porcellus, Felis catus, Heterocephalus glaber, Macaca fascicularis, Mustela putorius furo, Nomascus leucogenys, Pan troglodytes, and Serinus canaria.
  4. 3 Other reptile species included Alligator mississippiensis, Iguana iguana, Psammobates geometricus, and Pseudemys nelson.
  5. 4 Other plant species included Oryza sativa, Sorghum bicolor, and Vitis vinifera.
  6. 5 Others included sequences of unknown species and synthetic constructs.
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BMC Genomics

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