RNA
|
RNA-Seq
|
V6.5 cells
|
Feature
|
GSE20851
|
[32]
|
Histone modifications (H3, H3K4me1, H3K4me2, H3K4me3, H3K36me3, H4K20me3, H3K27me3, H3K9me3) and RNAPII
|
ChIP-Seq
|
V6.5 cells
|
Feature
|
GSE11172 GSE12241
|
[29]
|
RNAPII-ser2, RNAPII-ser5
|
ChIP-Seq
|
V6.5 cells
|
Feature
|
GSE20530
|
[30]
|
SMC1A, SMC3, MED12, MED1, NIPBL
|
ChIP-Seq
|
V6.5 cells
|
Feature
|
GSE22562
|
[22]
|
p300
|
ChIP-Seq
|
E14 cells
|
Feature
|
GSE11431
|
[5]
|
CTCF
|
ChIP-Seq
|
V6.5 cells
|
Feature
|
GSE18699
|
[28]
|
CpG islands, GC content, SNP, repeat regions and PhastCons most conserved regions
|
BED files
|
--
|
Feature
|
mm9
|
[31, 33–35]
|
OCT4, SOX2, NANOG, MYC, MYCN
|
ChIP-Seq
|
E14 cells
|
Training sets
|
GSE11431
|
[5]
|
KLF4, STAT3, SMAD1, E2F1, TFCP2L1, ZFX, ESRRB
|
ChIP-Seq
|
E14 cells
|
MTL analysis
|
GSE11431
|
[5]
|