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Table 2 Comparison between microarray and RT-qPCR mRNA levels

From: Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation

Number Gene sources Symbol Microarray(Mean fold change) RT-qPCR(Mean fold change)
    D7 D14 D21 D28 D7 D14 D21 D28
1 profile-1 STAT5A 1.00 0.50 0.99 0.35 1.00 1.18 0.56 0.46
2 profile-1 DBP 1.00 1.13 0.28 0.67 1.00 0.08 0.28 0.48
3 profile-1 FOXQ1 1.00 0.66 0.57 0.54 1.00 0.00 0.05 0.03
4 profile-1 NFIL3 1.00 0.75 0.23 0.19 1.00 0.10 0.35 0.26
5 profile-1 MTF1 1.00 0.66 0.50 0.75 1.00 0.58 0.97 0.82
6 profile-1 JUN 1.00 0.79 0.43 0.68 1.00 0.05 1.10 0.22
7 profile-1 KLF2 1.00 0.86 0.20 0.18 1.00 0.08 0.11 0.11
8 profile-1 CEBPA 1.00 1.20 0.09 0.10 1.00 0.02 0.18 0.17
9 profile-1 CREBBP 1.00 0.85 0.70 0.99 1.00 0.81 0.65 0.61
10 profile-1 SP3 1.00 0.84 0.88 0.87 1.00 0.98 0.85 0.47
11 profile-1 SATB1 1.00 0.94 0.28 0.26 1.00 0.80 0.24 0.15
12 profile-1 c-Myc 1.00 0.95 1.05 0.62 1.00 11.9 14.63 11.95
13 profile-1 GATA2 1.00 1.87 0.95 0.59 1.00 4.00 1.20 1.20
14 profile-1 KLF11 1.00 1.22 0.58 0.70 1.00 2.16 0.58 0.70
15 profile-2 FOG1 1.00 0.96 3.64 4.63 1.00 0.99 3.70 4.70
16 profile-2 USF1 1.00 1.01 0.85 1.26 1.00 0.71 1.45 2.02
17 profile-2 SP1 1.00 0.86 1.20 1.55 1.00 1.16 1.02 1.39
18 profile-2 KLF3 1.00 0.95 1.45 1.86 1.00 0.95 1.83 1.72
19 profile-2 KLF1 1.00 1.75 80.72 108.50 1.00 2.22 6.70 13.80
20 profile-2 POU2F1 1.00 0.91 1.28 1.90 1.00 0.57 1.23 1.16
21 profile-2 KLF13 1.00 0.98 1.12 1.83 1.00 2.16 0.58 8.70
22 profile-2 GATA1 1.00 1.83 94.63 112.31 1.00 1.80 7.40 8.40
23 profile-2 NF-E2 1.00 1.53 10.98 17.47 1.00 17.6 85.80 776.40
24 profile-2 ATF2 1.00 1.25 1.69 2.03 1.00 2.70 1.50 2.40
25 profile-2 FGFR3 1.00 1.20 47.87 39.77 1.00 8.22 956. 923.45
26 profile-2 MAPKK6 1.00 1.01 1.65 2.07 1.00 1.39 1.13 2.12
27 profile-2 HSP90kDa 1.00 0.95 1.65 1.75 1.00 0.63 1.50 8.57
28 profile-2 v-Myc 1.00 1.03 1.70 2.49 1.00 30.5 0.45 2.44
29 profile-2 CUTL1 1.00 1.02 1.58 2.20 1.00 1.02 0.42 2.06
30 Reference 1 ACTB 1.00 1.05 0.84 0.91 1.00 1.00 1.00 1.00
31 Reference 2 18 S 1.00 0.96 1.00 1.06 1.00 0.68 1.62 1.41