Table 2 Comparison between microarray and RT-qPCR mRNA levels
Number | Gene sources | Symbol | Microarray(Mean fold change) | RT-qPCR(Mean fold change) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | D7 | D14 | D21 | D28 | D7 | D14 | D21 | D28 |
1 | profile-1 | STAT5A | 1.00 | 0.50 | 0.99 | 0.35 | 1.00 | 1.18 | 0.56 | 0.46 |
2 | profile-1 | DBP | 1.00 | 1.13 | 0.28 | 0.67 | 1.00 | 0.08 | 0.28 | 0.48 |
3 | profile-1 | FOXQ1 | 1.00 | 0.66 | 0.57 | 0.54 | 1.00 | 0.00 | 0.05 | 0.03 |
4 | profile-1 | NFIL3 | 1.00 | 0.75 | 0.23 | 0.19 | 1.00 | 0.10 | 0.35 | 0.26 |
5 | profile-1 | MTF1 | 1.00 | 0.66 | 0.50 | 0.75 | 1.00 | 0.58 | 0.97 | 0.82 |
6 | profile-1 | JUN | 1.00 | 0.79 | 0.43 | 0.68 | 1.00 | 0.05 | 1.10 | 0.22 |
7 | profile-1 | KLF2 | 1.00 | 0.86 | 0.20 | 0.18 | 1.00 | 0.08 | 0.11 | 0.11 |
8 | profile-1 | CEBPA | 1.00 | 1.20 | 0.09 | 0.10 | 1.00 | 0.02 | 0.18 | 0.17 |
9 | profile-1 | CREBBP | 1.00 | 0.85 | 0.70 | 0.99 | 1.00 | 0.81 | 0.65 | 0.61 |
10 | profile-1 | SP3 | 1.00 | 0.84 | 0.88 | 0.87 | 1.00 | 0.98 | 0.85 | 0.47 |
11 | profile-1 | SATB1 | 1.00 | 0.94 | 0.28 | 0.26 | 1.00 | 0.80 | 0.24 | 0.15 |
12 | profile-1 | c-Myc | 1.00 | 0.95 | 1.05 | 0.62 | 1.00 | 11.9 | 14.63 | 11.95 |
13 | profile-1 | GATA2 | 1.00 | 1.87 | 0.95 | 0.59 | 1.00 | 4.00 | 1.20 | 1.20 |
14 | profile-1 | KLF11 | 1.00 | 1.22 | 0.58 | 0.70 | 1.00 | 2.16 | 0.58 | 0.70 |
15 | profile-2 | FOG1 | 1.00 | 0.96 | 3.64 | 4.63 | 1.00 | 0.99 | 3.70 | 4.70 |
16 | profile-2 | USF1 | 1.00 | 1.01 | 0.85 | 1.26 | 1.00 | 0.71 | 1.45 | 2.02 |
17 | profile-2 | SP1 | 1.00 | 0.86 | 1.20 | 1.55 | 1.00 | 1.16 | 1.02 | 1.39 |
18 | profile-2 | KLF3 | 1.00 | 0.95 | 1.45 | 1.86 | 1.00 | 0.95 | 1.83 | 1.72 |
19 | profile-2 | KLF1 | 1.00 | 1.75 | 80.72 | 108.50 | 1.00 | 2.22 | 6.70 | 13.80 |
20 | profile-2 | POU2F1 | 1.00 | 0.91 | 1.28 | 1.90 | 1.00 | 0.57 | 1.23 | 1.16 |
21 | profile-2 | KLF13 | 1.00 | 0.98 | 1.12 | 1.83 | 1.00 | 2.16 | 0.58 | 8.70 |
22 | profile-2 | GATA1 | 1.00 | 1.83 | 94.63 | 112.31 | 1.00 | 1.80 | 7.40 | 8.40 |
23 | profile-2 | NF-E2 | 1.00 | 1.53 | 10.98 | 17.47 | 1.00 | 17.6 | 85.80 | 776.40 |
24 | profile-2 | ATF2 | 1.00 | 1.25 | 1.69 | 2.03 | 1.00 | 2.70 | 1.50 | 2.40 |
25 | profile-2 | FGFR3 | 1.00 | 1.20 | 47.87 | 39.77 | 1.00 | 8.22 | 956. | 923.45 |
26 | profile-2 | MAPKK6 | 1.00 | 1.01 | 1.65 | 2.07 | 1.00 | 1.39 | 1.13 | 2.12 |
27 | profile-2 | HSP90kDa | 1.00 | 0.95 | 1.65 | 1.75 | 1.00 | 0.63 | 1.50 | 8.57 |
28 | profile-2 | v-Myc | 1.00 | 1.03 | 1.70 | 2.49 | 1.00 | 30.5 | 0.45 | 2.44 |
29 | profile-2 | CUTL1 | 1.00 | 1.02 | 1.58 | 2.20 | 1.00 | 1.02 | 0.42 | 2.06 |
30 | Reference 1 | ACTB | 1.00 | 1.05 | 0.84 | 0.91 | 1.00 | 1.00 | 1.00 | 1.00 |
31 | Reference 2 | 18 S | 1.00 | 0.96 | 1.00 | 1.06 | 1.00 | 0.68 | 1.62 | 1.41 |