Table 1 Abundances of selected SINEs and non-autonomous LINEs in the Tasmanian devil and wallaby genomes
From: Expansion of CORE-SINEs in the genome of the Tasmanian devil
SINE type | Total nts Tas. devil | Copy- number Tas. devil | % genome Tas. devil | Copy- number wallaby | % genome wallaby |
|---|---|---|---|---|---|
WSINE1 | 21214630 | 198314 | 0.72% | 128223 | 0.66% |
WALLSI2 | 0 | 0 | 0% | 48143 | 0,42% |
Mar1a_Mdo | 29386582 | 143332 | 1.00% | 131108 | 0.86% |
Mar1b_Mdo | 31618046 | 208863 | 1.08% | 176658 | 1.00% |
WALLSI3 | 8715448 | 36908 | 0.30% | 44063 | 0.08% |
WALLSI1 | 190557 | 1877 | 0.01% | 32754 | 0.30% |
WALLSI1a | 10610371 | 47889 | 0.36% | 36886 | 0.30% |
MAR1 | 2938652 | 22539 | 0.10% | 25150 | 0.09% |
Mar1c_Mdo | 6500819 | 50970 | 0.22% | 39736 | 0.20% |
P7SL_MD* | 2408356 | 12942 | 0.08% | 12720 | 0.10% |
WALLSI4 | 21363683 | 153231 | 0.73% | 154833 | 0.91% |
MdoRep1 | 14913384 | 119520 | 0.51% | 124233 | 0.62% |
MIR3/THER-2 | 79246143 | 678295 | 2.71% | 715973 | 3.44% |
MIR/THER-1 | 66889878 | 594020 | 2.28% | 490584 | 2.15% |