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Table 2 Candidate genes involved in bayberry fruit quality related metabolism

From: Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq

Pathway Gene Enzyme KO id (EC-No.) No. Alla No. Changeb No. Upc No. Downd
Genes related to color development
  CHS Chalcone synthase K00660 (2.3.1.74) 6 4 3 1
  CHI Chalcone isomerase K01859 (5.5.1.6) 2 0 0 0
  F3H Flavanone 3-hydroxylase K00475 (1.14.11.9) 7 3 3 0
  F3'H Flavanone 3'-hydroxylase K05280 (1.14.13.21) 5 3 3 0
Anthocyanin biosynthesis DFR Dihydroflavonol 4-reductase K00091/K13082 (1.1.1.219) 8 3 3 0
  ANS Anthocyanidin synthase K05277 (1.14.11.19) 9 4 2 1
  UFGT UDP-glucose:flvonoid 3-O-glucosyltransfersae K12930 (2.4.1.115) 7 3 2 1
Genes related to taste development
Sucrose metabolism SPS Sucrose phosphate synthase K00696 (2.4.1.14) 15 5 5 0
  SUS Sucrose synthase K00695 (2.4.1.13) 3 0 0 0
& transport Inv Invertase K01193 (3.2.1.26) 8 3 2 1
  SUT Sucrose transporter /e 10 0 0 0
  Aco Aconitase K01681 (4.2.1.3) 7 0 0 0
  NADP-IDH NADP-isocitrate dehydrogenase K00031 (1.1.1.42) 9 1 0 0
  GDH Glutamate dehydrogenase K00261 (1.4.1.3) K00262 (1.4.1.4) 8 1 0 0
  AST Aspartate aminotransferase K00813 (2.6.1.1) 7 0 0 0
GABA shunt AAT Alanine aminotransferase K00814 (2.6.1.2) 3 0 0 0
& citrate GAD Glutamate decarboxylase K01580 (4.1.1.15) 3 2 2 0
transport gabT gamma-aminobutyrate-aminotransferase K00823 (2.6.1.19) 4 1 0 1
  SSDH Succinate-semialdehyde dehydrogenase K00135 (1.2.1.16) 2 0 0 0
  GS Glutamine synthetase K01915 (6.3.1.2) 9 1 1 0
  V-ATPase Vacuolar H+-ATPase \f (3.6.3.14) 41 3 3 0
  Cit Citrate/H+ symporter /e 1 0 0 0
  1. a No. All indicates the total number of UniGenes analysed, b No. Change indicates the number of UniGenes with expression significantly changed during fruit ripening, c No. Up indicates the number of UniGenes with expression significantly up-regulated during fruit ripening,
  2. d No. Down indicates the number of UniGenes with expression significantly down-regulated during fruit ripening, e / indicates that this protein is not an enzyme, f \ indicates omission of numbers of Ko id because different subunits of V-ATPase have different Ko ids.