Table 1 Characteristics of assembled contigs, scaffolds and unigenes
Nucleotides length (bp) | Contigs | Scaffolds | Unigenes |
|---|---|---|---|
75–500 | 62,918 | 30,245 | 15,576 |
501–1,000 | 4,821 | 5,253 | 5,143 |
1,001–1,500 | 831 | 1,509 | 1,504 |
1,501–2,000 | 205 | 449 | 448 |
2,001–2,500 | 26 | 73 | 71 |
2,501–3,000 | 6 | 7 | 8 |
>3,000 | 3 | 5 | 6 |
Total | 68,810 | 37,541 | 22,756 |
N50 (bp) | 291 | 464 | 592 |
Average length (bp) | 223 | 364 | 485 |
Total nucleotides length (bp) | 16,017,394 | 13,656,242 | 11,046,525 |