Skip to main content

Table 1 Distribution of reads aligned to the human reference genome: average (standard deviation) in millions, and percentage

From: Exome sequencing generates high quality data in non-target regions

 

Overall

Inside TR

Outside ≤ 200 bp

Outside >200 bp

SureSelect (n = 22)

# Reads

# Reads

%

# Reads

%

# Reads

%

 Before filter

63.4 (9.6)

34.3 (4.9)

54.1

6.4 (1.2)

10.1

22.7 (3.9)

35.8

 After filter

57.2 (8.6)

32.0 (4.5)

56.1

6.0 (1.1)

10.4

19.2 (3.3)

33.5

TrueSeq (n = 6)

 Before filter

86.2 (2.5)

37.0 (0.7)

42.9

17.1 (0.3)

19.8

32.1 (1.3)

37.2

 After filter

75.1 (2.1)

34.8 (0.7)

46.3

16.3 (0.3)

21.7

24.0 (1.1)

32.0

1000 G (n = 6)

 Before filter

33.9 (8.1)

7.6 (1.2)

22.3

4.7 (1.7)

14.0

21.6 (8.4)

63.7

 After filter

25.6 (3.8)

7.3 (1.1)

28.7

4.7 (1.7)

18.6

13.6 (3.6)

52.7

  1. The filter was MAPQ ≥ 20.