Exome sequencing generates high quality data in non-target regions

BMC Genomics

Table 3 Distributions of depth for SNPs outside capture regions that had GQ ≥ 20 and depth ≥ 5

Depth	SureSelect		TrueSeq		1000 G
Depth	≤ 200 bp	> 200 bp	≤ 200 bp	> 200 bp	≤ 200 bp	> 200 bp
5	1156	3463	1225	3963	38	194
6	1000	1681	1278	2950	46	142
7	4036	3630	3200	4702	135	290
8	3483	2570	4005	4582	123	246
9	3040	2020	4222	3995	103	199
10	2647	1658	4231	3447	98	174
11	2349	1420	4261	2972	95	160
12	2099	1251	4223	2628	85	142
13	1866	1096	4188	2366	91	122
14	1694	995	4110	2136	84	115
15	1535	891	4072	1906	84	105
16	1376	823	3949	1749	71	101
17	1270	766	3887	1649	67	91
18	1159	721	3743	1490	67	84
19	1072	672	3654	1421	64	83
≥ 20	15074	15539	63620	62350	1762	1884

The numbers are average numbers of SNPs over the samples from the same capture assay.

ISSN: 1471-2164