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Table 4 SNPs > 200 bp outside target regions

From: Exome sequencing generates high quality data in non-target regions

Samples

Average depth

Intronic

Splicinga

ncRNAb

Intergenic

Exonic

Non-synonymous

Stopgain

Stoploss

SureSelect

≥ 5

6194

35

4873

33569

981

25

4

(n = 22)

≥ 10

4297

34

3790

21713

792

17

3

TrueSeq

≥ 5

29372

8

7537

74431

211

4

0

(n = 6)

≥ 10

16252

7

10153

60889

199

4

0

1000 G

≥ 5

2619

11

309

1951

307

6

1

(n = 6)

≥ 10

1352

8

168

1183

213

5

1

  1. a Variant is within 2-bp of a splicing junction.
  2. b Variant overlaps a transcript without coding annotation in the gene definition.