Figure 4
From: Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants
Degradome sequencing data-based identification of the targets regulated by the sequestered microRNAs revealed the novel self-regulation and co-regulation mechanisms. (A) Self-regulation of ath-miR172b. (B) Self-regulation of ath-miR400. (C) Co-regulation of the transcript LOC_Os10g33700.1 by osa-miR809 and osa-miR819. (D) Co-regulation of the transcript LOC_Os10g39970.1 by osa-miR809 and osa-miR819. For all the sub-figures [(A) to (D)], the first panels depict the degradome signals all along the target transcripts, and the other panels provide detailed views of the cleavage signals within the regions surrounding the target recognition sites (denoted by gray horizontal lines). The transcript IDs are shown in the first panels, and the miRNA IDs are listed in the other panels. The x axes measure the positions of the signals along the transcripts, and the y axes measure the signal intensities based on normalized counts (in RPM, reads per million), allowing cross-library comparison. See “Data sets used in this study” in the METHODS section for the degradome data sets used in this analysis.