Table 1 General features of the Geobacter lovleyi strain SZ chromosome
Chromosome | Â | Â |
|---|---|---|
General features | Â | |
| Â | Size (bp) | 3,917,761 |
| Â | GC percentage | 54.8 |
| Â | Total number of predicted protein-coding genes | 3,644 |
| Â | Number of pseudogenes | 38 |
Protein-coding genes | Â | |
| Â | Total intact protein-coding genes | 3,606 |
| Â | - matching annotated homologs | 3,138 |
| Â | - matching hypotheticals only | 296 |
| Â | - with no public database matches | 171 |
| Â | - in one or more COGs | 2817 |
| Â | - in energy production COGs | 279 |
| Â | - in coenzyme metabolism COGs | 122 |
| Â | - as predicted c-type cytochromes | 49 |
| Â | - percent with top BlastP match in Geobacter spp. | 40% |
| Â | - percent with top BlastP match in Pelobacter spp. | 29% |
|  | - percent with top BlastP match in other δ-Proteobacteria | 5% |
Non-protein-coding features | Â | |
| Â | Number of rRNA operons (16S-23S-5S) | 2 |
| Â | Number of transfer RNAs | 45 |
| Â | CRISPR regions | 1 |