Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome

BMC Genomics

Table 2 Codon usage in full-length coding sequences of Eimeria tenella

AA	Codon	Frequency	Codon Usage Value*	AA	Codon	Frequency	Codon Usage Value*
Phe	UUU	2044	16.32	Tyr	UAU	968	7.73
	UUC	2545	20.32		UAC	1726	13.78
Leu	UUA	695	5.55	TER	UAA	121	0.97
	UUG	2262	18.06		UAG	114	0.91
	CUU	2067	16.51	His	CAU	926	7.39
	CUC	2224	17.76		CAC	1715	13.69
	CUA	986	7.87	Gln	CAA	2156	17.22
	CUG	3595	28.71		CAG	4176	33.35
Ile	AUU	1949	15.56	Asn	AAU	1480	11.82
	AUC	1592	12.71		AAC	2301	18.37
	AUA	1049	8.38	Lys	AAA	2786	22.25
Met	AUG	2553	20.39		AAG	4160	33.22
Val	GUU	2001	15.98	Asp	GAU	2237	17.86
	GUC	1886	15.06		GAC	3588	28.65
	GUA	933	7.45	Glu	GAA	4165	33.26
	GUG	2951	23.56		GAG	4561	36.42
Ser	UCU	1806	14.42	Cys	UGU	681	5.44
	UCC	1413	11.28		UGC	1703	13.60
	UCA	1297	10.36	TER	UGA	198	1.58
	UCG	1285	10.26	Trp	UGG	1299	10.37
Pro	CCU	1777	14.19	Arg	CGU	938	7.49
	CCC	1970	15.73		CGC	1952	15.59
	CCA	1719	13.73		CGA	926	7.39
	CCG	1579	12.61		CGG	1331	10.63
Thr	ACU	1716	13.70	Ser	AGU	1002	8.00
	ACC	1263	10.09		AGC	2825	22.56
	ACA	1734	13.85	Arg	AGA	1420	11.34
	ACG	1588	12.68		AGG	1393	11.12
Ala	GCU	3388	27.05	Gly	GGU	1252	10.00
	GCC	2905	23.20		GGC	3142	25.09
	GCA	4159	33.21		GGA	2125	16.97
	GCG	2926	23.36		GGG	2007	16.03

*Codon usage values given are the frequency per 1000 codons.
Under-represented codons (frequency of usage less than 10 per 1000 codons) are in italics while over-represented codons (frequency of usage more than 30 per 1000 codons) are in bold.

ISSN: 1471-2164