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Table 2 Codon usage in full-length coding sequences of Eimeria tenella

From: Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome

AA Codon Frequency Codon Usage Value* AA Codon Frequency Codon Usage Value*
Phe UUU 2044 16.32 Tyr UAU 968 7.73
  UUC 2545 20.32   UAC 1726 13.78
Leu UUA 695 5.55 TER UAA 121 0.97
  UUG 2262 18.06   UAG 114 0.91
  CUU 2067 16.51 His CAU 926 7.39
  CUC 2224 17.76   CAC 1715 13.69
  CUA 986 7.87 Gln CAA 2156 17.22
  CUG 3595 28.71   CAG 4176 33.35
Ile AUU 1949 15.56 Asn AAU 1480 11.82
  AUC 1592 12.71   AAC 2301 18.37
  AUA 1049 8.38 Lys AAA 2786 22.25
Met AUG 2553 20.39   AAG 4160 33.22
Val GUU 2001 15.98 Asp GAU 2237 17.86
  GUC 1886 15.06   GAC 3588 28.65
  GUA 933 7.45 Glu GAA 4165 33.26
  GUG 2951 23.56   GAG 4561 36.42
Ser UCU 1806 14.42 Cys UGU 681 5.44
  UCC 1413 11.28   UGC 1703 13.60
  UCA 1297 10.36 TER UGA 198 1.58
  UCG 1285 10.26 Trp UGG 1299 10.37
Pro CCU 1777 14.19 Arg CGU 938 7.49
  CCC 1970 15.73   CGC 1952 15.59
  CCA 1719 13.73   CGA 926 7.39
  CCG 1579 12.61   CGG 1331 10.63
Thr ACU 1716 13.70 Ser AGU 1002 8.00
  ACC 1263 10.09   AGC 2825 22.56
  ACA 1734 13.85 Arg AGA 1420 11.34
  ACG 1588 12.68   AGG 1393 11.12
Ala GCU 3388 27.05 Gly GGU 1252 10.00
  GCC 2905 23.20   GGC 3142 25.09
  GCA 4159 33.21   GGA 2125 16.97
  GCG 2926 23.36   GGG 2007 16.03
  1. *Codon usage values given are the frequency per 1000 codons.
  2. Under-represented codons (frequency of usage less than 10 per 1000 codons) are in italics while over-represented codons (frequency of usage more than 30 per 1000 codons) are in bold.