Table 4 Common highly under-amplified regions (>3 fold) in Normal, CF1, and CF2 samples after WGA
From: Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development
Chromosome | Cytoband | Stat (bp) | Stop (bp) | No. of Probes | No. of Genes* |
|---|---|---|---|---|---|
Chr1 | p36.33 - p36.32 | 787630 | 3693246 | 967 | 88 |
Chr2 | q37.3 | 241165907 | 241864699 | 258 | 13 |
Chr4 | p16.3 | 533101 | 3842102 | 668 | 38 |
Chr5 | p15.33 | 25942 | 2285711 | 724 | 30 |
Chr7 | p22.3 | 42776 | 2759847 | 734 | 30 |
Chr8 | q24.3 | 142067269 | 146261757 | 1480 | 110 |
Chr9 | q34.2 - q34.3 | 136872507 | 140734384 | 1500 | 106 |
Chr10 | p15.3 | 499391 | 681067 | 86 | 1 |
Chr11 | p15.5 - p15.4 | 271403 | 3216315 | 997 | 78 |
Chr12 | p13.33-p13.31 | 163393 | 7069315 | 87 | 6 |
Chr13 | q34 | 114305327 | 114924254 | 174 | 8 |
Chr14 | q32.31-p32.32 | 101469473 | 105943028 | 741 | 63 |
Chr16 | p13.3 | 93428 | 3286713 | 1256 | 169 |
Chr16 | q24.2 - q24.3 | 87871999 | 89999459 | 555 | 35 |
Chr17 | p13.3 | 47346 | 1964509 | 814 | 13 |
Chr17 | q25.2-p25.3 | 74886218 | 80217558 | 601 | 62 |
Chr18 | q23 | 77064970 | 77617915 | 219 | 6 |
Chr19 | p13.3 | 259195 | 2442313 | 983 | 103 |
Chr20 | q13.33 | 60782793 | 62819250 | 880 | 91 |
ChrX | q28 | 152713107 | 153194997 | 218 | 23 |
ChrY | p11.32 | 10891 | 1663423 | 443 | 19 |