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Table 2 Chromosome wide significant boar taint QTLs confirmed by a haplotype analysis mapped to Sscrofa10.2 in different breeds.

From: Genome-wide association scan and phased haplotype construction for quantitative trait loci affecting boar taint in three pig breeds

   QTDT QFAM   
SSC# Trait p-value emperical p-value Peak (Mb) Interval (Mb)
Duroc      
3 log Skatole 2.0E-05' 8.0E-05 19.615 16.518-20.52
3 log Androstenone 8.0E-05 4.0E-05 120.04 113.99-122.62
5 log S/I-index 1.0E-05 2.0E-05 18.728 18.728-18.962
6 log Androstenone 1.0E-05 3.0E-05 75.721 75.721-76.450
10a log Indole 4.0E-05 NS 7.961 7.793-18.265
10b log Indole 2.0E-05 NS 62.985 52.066-63.550
12 log Androstenone 1.0E-05 2.0E-05 41.225 41.209-46.114
14 log Androstenone 6.0E-05 6.0E-05 19.421 19.421-21.826
Landrace      
1 log Androstenone 3.0E-05 NS 164.281 164.281-166.282
2a log Androstenone 2.0E-05 6.0E-05 98.469 85.522-106.398
2b log Androstenone 2.0E-05 4.0E-05 142.568 142.568-144.814
5 log S/I-index 6.0E-06 4.0E-05 87.29 62.442-88.563
6 log Indole 7.0E-06 3.0E-05 134.996 134.141-140.591
7 log Androstenone 1.0E-06* 1.0E-05 40.375 2.451-40.421
11 log Indole 4.0E-05 4.0E-05 87.549 single SNP
12 log Androstenone 5.0E-05 4.0E-05 45.898 single SNP
14 log S/I-index 3.0E-05 3.0E-05 152.887 149.608-153.745
14 log Indole 2.0E-06* 1.0E-05 151.637 150.832-153.786
15 log Indole 4.0E-05 4.0E-05 17.709 2.724-17.767
Yorkshire      
6a log S/I-index NS 1.0E-05 76.056 75.839-80.408
6b log S/I-index NS 2.0E-05 157.089 155.897-157.734
7 log S/I-index 3.0E-05' 1.0E-05 99.096 98.947-101.548
8 log S/I-index NS 2.0E-05 38.293 35.328-40.051
9 log Skatole 7.0E-06 1.0E-05 30.292 15.055-30.539
11b log Androstenone 8.0E-06 7.0E-05 75.129 78.672-80.006
12 log Androstenone 2.0E-05 7.0E-05 37.443 35.941-45.383
14 log Androstenone 5.0E-06 2.0E-05 138.164 single SNP
14 log Indole 6.0E-07** 1.0E-05 152.48 149.326-153.593
  1. **,* = p < 0.01, p < 0.05 genome-wide significant, # = Sus scrofa chromosome
  2. ' = QTDT on none log transformed trait, NS = not significant at the 5% Bonferroni level