A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

BMC Genomics

Table 1 Characteristics of Nile tilapia chromosome maps

	No of RH groups	Size (cR₃₅₀₀)	No. of positions	No of co-localized markers	No. of markers	No. of genes	No. of BAC	No. of microsat	No. of SNP	No. of anchors
	No of RH groups	Size (cR₃₅₀₀)	No. of positions	No of co-localized markers	No. of markers	No. of genes	No. of BAC	No. of microsat	No. of SNP	Stickleback	Pufferfish	Medaka	Zebrafish
LG1	2	1145	45		45	30	4	4	7	30	21	28	19
LG2	1	1038	44		44	34	3	2	5	34	24	26	23
LG3	5	1167	35	1	36	13	2	6	15	16	2	16	10
LG4	2	1296	55	2	57	45	2	3	7	42	23	38	28
LG5	3	1862	61	2	63	40	5	7	11	30	28	31	26
LG6	3	1622	60		60	43	4	8	5	44	24	30	32
LG7	3	2241	80		80	57	5	12	6	51	29	47	40
LG 8-24	1	1677	61	2	63	48	2	3	10	42	26	40	35
LG9	2	1177	37		37	20	2	10	5	20	15	18	14
LG10	3	468	23		23	17	2	4	0	17	14	14	5
LG11	1	1465	48	3	51	29	5	7	10	27	19	21	19
LG12	1	1906	80	9	89	56	2	10	21	53	37	44	41
LG13	3	1349	48	2	50	31	2	4	13	34	29	30	26
LG14	1	1508	53	1	54	34	2	10	8	31	18	26	21
LG15	2	1269	47	3	50	36	2	5	7	29	20	28	25
LG 16-21	4	1624	55		55	27	5	10	13	26	21	22	23
LG17	2	1489	51	3	54	31	3	7	13	25	16	24	23
LG18	2	1325	54	1	55	38	2	3	12	37	16	38	30
LG19	2	1462	53		53	36	3	6	8	36	27	30	24
LG20	3	1373	55	2	57	41	3	3	10	44	24	33	30
LG22	3	1095	40	4	44	25	2	4	13	24	8	19	19
LG23	1	1011	38	3	41	22	2	5	12	21	8	20	18
Sub-Total		30,569	1123	38	1161	753	64	133	211	713	449	623	531
Orphan groups		3515	133	4	137	71	13	8	45	72	38	57	54
Unlinked					60	31	5	8	16
Total		34,084			1358	855	82	149	272

ISSN: 1471-2164