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Table 1 Intra-chip and inter-chip average Xl-PSID intensity values (a.u.)

From: Probing the Xenopus laevis inner ear transcriptome for biological function

  Intra-chip averages Inter-chip averages
  XIE1 XIE2 XIE3 XIE
Xl-PSID intensity Xl-PSID intensity Xl-PSID intensity Xl-PSID intensity
All Xl-PSIDs
(n = 15611)
5.62 + 2.97 5.61 + 2.96 5.61 + 2.94 5.62 + 0.13
Control Xl-PSIDs
(n = 120)
4.10 + 3.83 4.06 + 3.78 4.05 + 3.78 4.07 + 0.05
Experimental
Xl-PSIDs
(n = 15491)
5.64 + 2.96 5.63 + 2.95 5.62 + 2.93 5.63 + 0.13
Xl-PSIDs with
“P”/”M” GCOS calls
( n = 12177)
6.55 + 2.67 6.54 + 2.66 6.54 + 2.65 6.54 + 0.17
Xl-PSIDs with “A” GCOS calls in all 3 XIE chips
( n = 3314)
2.27 + 0.41 2.26 + 0.40 2.26 + 0.39 2.67 + 0.01
  1. GCRMA intra-chip averages are the calculated average intensity of the normalized Xl-PSIDs on a given chip (XIE1, XIE2, or XIE3; see Additional file 1). GCRMA inter-chip averages are computed as the average intensity of all average Xl-PSID intensity values for all three chips. Data are presented as average + SD.