Probing the Xenopus laevis inner ear transcriptome for biological function

BMC Genomics

Table 1 Intra-chip and inter-chip average Xl-PSID intensity values (a.u.)

	Intra-chip averages			Inter-chip averages
	XIE1	XIE2	XIE3	XIE
	Xl-PSID intensity	Xl-PSID intensity	Xl-PSID intensity	Xl-PSID intensity
All Xl-PSIDs (n = 15611)	5.62 + 2.97	5.61 + 2.96	5.61 + 2.94	5.62 + 0.13
Control Xl-PSIDs (n = 120)	4.10 + 3.83	4.06 + 3.78	4.05 + 3.78	4.07 + 0.05
Experimental Xl-PSIDs (n = 15491)	5.64 + 2.96	5.63 + 2.95	5.62 + 2.93	5.63 + 0.13
Xl-PSIDs with “P”/”M” GCOS calls ( n = 12177)	6.55 + 2.67	6.54 + 2.66	6.54 + 2.65	6.54 + 0.17
Xl-PSIDs with “A” GCOS calls in all 3 XIE chips ( n = 3314)	2.27 + 0.41	2.26 + 0.40	2.26 + 0.39	2.67 + 0.01

GCRMA intra-chip averages are the calculated average intensity of the normalized Xl-PSIDs on a given chip (XIE1, XIE2, or XIE3; see Additional file 1). GCRMA inter-chip averages are computed as the average intensity of all average Xl-PSID intensity values for all three chips. Data are presented as average + SD.

ISSN: 1471-2164