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Table 6 Top 10 Xl-PSIDs in each inner ear gene category

From: Probing the Xenopus laevis inner ear transcriptome for biological function

6A. IET/Xl-PSID 6B. DF/Xl-PSID
Xl-PSID Average intensity Rank IET HGNCs Xl-PSID Average intensity Rank DF HGNCs
Xl.10055.1.S1_at 14.94 1 CLU Xl.2292.1.S1_at 14.29 1 PMP22
Xl.21377.1.S1_a_at 14.81 2 RPS4X Xl.24754.1.S1_a_at 14.16 2 RPS19
Xl.23752.1.S1_x_at 14.68 3 RPS3A Xl.8924.1.A1_at 13.04 3 GJB2
Xl.212.2.S1_a_at 14.34 4 FRZB Xl.8851.1.S1_at 12.83 4 ITM2B
Xl.2292.1.S1_at 14.29 5 PMP22 Xl.20900.1.S1_at 12.44 5 CD151
Xl.8860.1.S1_at 14.08 6 TPT1 Xl.4138.2.S1_x_at 12.42 6 ACTB
Xl.509.1.S1_at 14.06 7 ATP1B2 Xl.606.1.S1_s_at 12.31 7 COL2A1
Xl.2617.1.S1_at 13.87 8 RPSA Xl.26213.1.S1_at 12.13 8 COL1A1
Xl.4905.1.S1_at 13.8 9 GSTM4 Xl.2652.1.S1_at 11.77 9 PLOD3
Xl.21686.1.S1_at 13.74 10 ATP1A1 Xl.1023.1.S2_at 11.36 10 POU3F4
6 C. IC/Xl-PSID 6D. IT/Xl-PSID
Xl-PSID Average Intensity Rank IC HGNCs Xl-PSID Average intensity Rank IT HGNCs
Xl.24385.1.S1_at 12.51 1 VDAC2 Xl.3792.1.S1_x_at 14.31 1 ATP1A1
Xl.23903.1.S1_at 12.32 2 FXYD3 Xl.509.1.S1_at 14.06 2 ATP1B2
Xl.1198.1.S1_at 10.85 3 GRID1 Xl.3792.1.S1_s_at 13.26 3 ATP1A1
Xl.9482.1.A1_at 10.44 4 ABP1 Xl.8924.1.A1_at 13.04 4 GJB2
Xl.11705.1.S1_at 10.42 5 SLC25A12 Xl.6045.1.S1_at 12.54 5 ATP1B3
Xl.21929.1.S1_at 9.70 6 KCNK1 Xl.24385.1.S1_at 12.51 6 VDAC2
Xl.21035.1.S1_at 9.69 7 SCNN1B Xl.23903.1.S1_at 12.32 7 FXYD3
Xl.6273.1.S1_at 9.68 8 VDAC1 Xl.18325.1.A1_at 12.24 8  
Xl.1407.1.S1_at 9.55 9 KCNAB2 Xl.8573.2.S1_a_at 11.67 9 ATP6V0C
Xl.17482.1.S1_at 9.53 10 GRINA Xl.8573.2.S1_x_at 11.67 10 ATP6V0C
6E. pTF/Xl-PSID  
Xl-PSID Average intensity Rank gene symbol
Xl.25811.2.S1_a_at 13.55 1 atf4
Xl.25811.1.S1_x_at 13.36 2 atf4
Xl.3536.1.S1_x_at 12.59 3 btf3
Xl.3536.2.S1_x_at 12.27 4 btf3
Xl.3536.2.S1_a_at 12.23 5 btf3
Xl.1023.1.S2_at 11.36 6 pou3f4
Xl.3360.1.S1_a_at 10.96 7 ilf2
Xl.12057.2.A1_a_at 10.78 8 srebf1
Xl.4461.1.A1_at 10.76 9 ldb1
Xl.683.1.S1_at 10.7 10 six1
  1. The Xl-PSIDs with the 10 highest intensity values are listed for each inner ear gene category. The corresponding HGNC symbols or gene symbols are listed for all categories. In (D), two pairs of Xl-PSIDs correspond to the same HGNC symbol and have probes derived from the same consensus sequence. One Xl-PSID in (D) did not have a HGNC symbol due to the lack of sequence similarity to a human orthologue.