Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome

Table 1 Putative transposable elements identified in Silene BAC clones

Found in	TAIR accession	Function	ProDom annotation	Silene repeats coverage
S. latifolia/ S. vulgaris ^a	ATMG00860	Mitochondrion/ hypothetical protein	Transposable element	0 %
S. latifolia/ S. vulgaris	AT4G23160	Cysteine-rich receptor-like protein kinase 8/ polyprotein	Transposable element	80 %
S. latifolia	ATMG00710	Mitochondrion/ hypothetical protein	Transposable element	100 %
S. vulgaris ^a	AT3G01410	Putative RNase H	Transposable element	77 %
S. latifolia	ATMG00310	Mitochondrion/ hypothetical protein	Transposable element	49 %
S. latifolia	AT5G41980	Uncharacterized protein	Transposable element	0 %
S. latifolia/ S. vulgaris	AT2G01050	Nucleic acid binding / zinc ion binding/ uncharacterized protein	Transposable element	25 %
S. latifolia/ S. vulgaris	AT1G43760	Uncharacterized protein	Transposable element	20 %
S. latifolia	AT4G20520	RNA binding / RNA-directed DNA polymerase/ uncharacterized protein	Transposable element	0 %
S. latifolia	ATMG01250	Mitochondrion/ hypothetical protein	Transposable element	23 %

^aThe sequence has been found twice in the BAC clone.
Putative transposable elements were identified by BLASTX searches against the Arabidopsis thaliana proteome (TAIR10) with an E-value cut-off of 1E-4, ProDom annotations and coverage analysis with the Silene repeated sequences database [37].

ISSN: 1471-2164