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Table 1 Summary of telomeric and subtelomeric assemblies

From: Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi

Group Telomeric assemble Chromosome (contig) Hexameric repeat (bp) Junction (bp) Distance to first gene (bp)1 First gene Subtelomeric region size (bp)
I Tel1 TcChr9-P 269 185 687 RHS protein, putative 57748
  Tel2 TcChr11-S 167 185 2687 surface protease GP63, putative 125799
  Tel3 TcChr19-S 545 185 1612 TS, putative 145064
  Tel4 TcChr22-P 503 186 656 RHS protein (pseudogene), putative 108269
  Tel5 TcChr25-P 263 189 750 RNA helicase (pseudogene), putative 68130
  Tel6 TcChr28-P 257 180 840 RHS protein, putative 182470
  Tel7 TcChr38-S 353 188 705 RHS protein (pseudogene), putative 41697
II Tel8 TcChr31-P 263 190 677 RHS protein (pseudogene), putative 55070
  Tel9 TcChr35-S 360 190 788 RHS protein, putative 66114
III Tel10 TcChr13-P 257 186 587 SIRE 23401
  Tel11 TcChr35-P 528 190 824 RHS protein, putative 29523
IV Tel12 TcChr6-S 27 191 659 RHS protein (pseudogene), putative 39993
  Tel13 TcChr26-P 29 148 891 RHS protein, putative 66326
  Tel14 TcChr33-S 557 188 629 RHS protein, putative 23143
  Tel15 TcChr34-S 281 186 1733 TS, putative 53258
  Tel16 TcChr35-P 691 151 - hypothetical protein3 92020
  Tel17 TcChr37-S 272 188 829 RHS protein, putative 81949
  Tel18 TcChr40-P 101 184 721 RHS protein (pseudogene), putative 71586
V Tel19 TcChr17-S 161 187 1744 TS, putative 31196
  Tel20 TcChr23-S 143 190 1010 RHS protein (pseudogene), putative 76042
  Tel21 TcChr25-S 857 184 655 RHS protein, putative 37757
  Tel22 TcChr36-P 289 191 960 RHS protein (pseudogene), putative 19098
  Tel23 TcChr39-P 179 187 694 RHS protein (pseudogene), putative 20226
VI Tel24 TcChr11-P 545 193 414 VIPER/SIRE 23217
  Tel25 TcChr22-S 377 190 631 RHS protein (pseudogene), putative 20668
  Tel26 TcChr27-P 365 195 407 SIRE 8962
  Tel27 TcChr36-S 431 184 1555 TS, putative 28019
VII Tel28 TcChr15-P 183 183 865 RHS protein, putative 8937
VIII Tel29 TcChr13-S 350 190 707 RHS protein, putative 11765
  Tel30 TcChr39-S 407 189 913 RHS protein, putative 20968
IX Tel31 Tcruzi_7430 809 145 751 RHS protein (pseudogene), putative 4543
X Tel32 TcChr20-S 533 186 1658 TS, putative 5507
XI Tel334 Tcruzi_8424 330 193 665 RHS protein (pseudogene), putative 46301
  Tel34 TcChr25-S 420 182 672 RHS protein (pseudogene), putative 38166
  Tel35 TcChr35-S 366 186 797 RHS protein, putative 18678
  Tel364 Tcruzi_149 71 189 684 RHS protein, putative 1068
  Tel374 Tcruzi_2522 65 189 640 RHS protein, putative 1233
  Tel384 Tcruzi_4706 109 186 545 RHS protein (pseudogene), putative 3829
  Tel394 Tcruzi_6314 875 182 634 RHS protein (pseudogene), putative 1904
  Tel404 Tcruzi_6749 281 184 673 RHS protein (pseudogene), putative 4104
  Tel414 Tcruzi_7734 125 179 568 RHS protein (pseudogene), putative 6479
  Tel42 TcChr21-P 210 178 1745 TS, putative 34174
  Tel43 TcChr34-P 479 182 1667 TS (pseudogene), putative 5464
  Tel444 Tcruzi_6797 61 185 691 RHS protein (pseudogene), putative 28339
  Tel45 TcChr40-S 180 189 837 RHS protein, putative 14078
  Tel46 TcChr19-P 185 185 836 RHS protein (pseudogene), putative gap region
  Tel47 TcChr21-S 186 186 1641 TS, putative 66938
  Tel482 TcChr27-S 193, 191 193, 191 836; 711 RHS protein, putative; RHS protein (pseudogene), putative 22552
  Tel49 TcChr31-P 187 187 642 RHS protein, putative 44331
  1. 1 Distance between the telomeric junction and the first gene in base pairs
  2. 2 This chromosomal end has two telomeric repeats followed by the telomeric junction
  3. 3 The first gene after the telomeric repeats is partially inserted inside the telomeric junction
  4. 4 Contigs harboring telomeric repeats not assembled in chromosome sized scaffolds. The subtelomeric region size indicated in the table corresponds to the whole unassigned contig sequence
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BMC Genomics

ISSN: 1471-2164

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