Skip to main content

Table 1 Oligonucleotides for miR-Q arrays.

From: Quantification and accurate normalisation of small RNAs through new custom RT-qPCR arrays demonstrates Salmonella-induced microRNAs in human monocytes

miRNA

RT6-'miRNA'

'miRNA'-rev

Ref.

let-7a

tgtcaggcaaccgtattcacc gtgagtggtaactat

cgtcagatgtccgagtagagg gggaacggcgtgaggtagtaggttgtata

[9]

let-7b

tgtcaggcaaccgtattcacc gtgagtggtaaccac

cgtcagatgtccgagtagagg gggaacggcgtgaggtagtaggttgtgtg

[9]

let-7c

tgtcaggcaaccgtattcacc gtgagtggtaaccat

cgtcagatgtccgagtagagg gggaacggcgtgaggtagtaggttgtatg

[9]

let-7e

tgtcaggcaaccgtattcacc gtgagtggtaactat

cgtcagatgtccgagtagagg gggaacggcgtgaggtaggaggttgt

[8]

let-7f

tgtcaggcaaccgtattcacc gtgagtggtactata

cgtcagatgtccgagtagagg gggaacggcgtgaggtagtagattgtat

This study

miR-103a

tgtcaggcaaccgtattcacc gtgagtggttcatag

cgtcagatgtccgagtagagg gggaacggcgagcagcattgtacaggg

[17]

miR-106a

tgtcaggcaaccgtattcacc gtgagtggttacctg

cgtcagatgtccgagtagagg gggaacggcgaaaagtgcttacagtg

This study

miR-141

tgtcaggcaaccgtattcacc gtgagtggtccatct

cgtcagatgtccgagtagagg gggaacggcgtaacactgtctggtaaag

[9]

miR-143

tgtcaggcaaccgtattcacc gtgagtggttgagct

cgtcagatgtccgagtagagg gggaacggcgtgagatgaagcactgt

This study

miR-145

tgtcaggcaaccgtattcacc gtgagtggtaaggga

cgtcagatgtccgagtagagg gggaacggcggtccagttttcccaggaa

[9]

miR-146a

tgtcaggcaaccgtattcacc gtgagtggtaaccca

cgtcagatgtccgagtagagg gggaacggcgtgagaactgaattcca

[8]

miR-146b-5p

tgtcaggcaaccgtattcacc gtgagtggtagccta

cgtcagatgtccgagtagagg gggaacggcgtgagaactgaattccata

[8]

miR-148a

tgtcaggcaaccgtattcacc gtgagtggtacaaag

cgtcagatgtccgagtagagg gggaacggcgtcagtgcactacagaa

This study

miR-155

tgtcaggcaaccgtattcacc gtgagtggtacccct

cgtcagatgtccgagtagagg gggaacggcgttaatgctaatcgtgat

[8]

miR-15b

tgtcaggcaaccgtattcacc gtgagtggttgtaaa

cgtcagatgtccgagtagagg gggaacggcgtagcagcacatcatggttt

This study

miR-16

tgtcaggcaaccgtattcacc gtgagtggtcgccaa

cgtcagatgtccgagtagagg gggaacggcgtagcagcacgtaaata

[9]

miR-181a

tgtcaggcaaccgtattcacc gtgagtggtcaccga

cgtcagatgtccgagtagagg gggaacggcgaacattcaacgctg

[9]

miR-191

tgtcaggcaaccgtattcacc gtgagtggtagctgc

cgtcagatgtccgagtagagg gggaacggcgcaacggaatcccaaaa

This study

miR-200c

tgtcaggcaaccgtattcacc gtgagtggtccatca

cgtcagatgtccgagtagagg gggaacggcgtaatactgccgggtaa

[9]

miR-21

tgtcaggcaaccgtattcacc gtgagtggttcaaca

cgtcagatgtccgagtagagg gggaacggcgtagcttatcagactga

[9]

miR-214

tgtcaggcaaccgtattcacc gtgagtggtactgcc

cgtcagatgtccgagtagagg gggaacggcgacagcaggcacagacagg

This study

miR-222

tgtcaggcaaccgtattcacc gtgagtggtgagacc

cgtcagatgtccgagtagagg gggaacggcgagctacatctggctactg

This study

miR-22-3p

tgtcaggcaaccgtattcacc gtgagtggtacagtt

cgtcagatgtccgagtagagg gggaacggcgaagctgccagttgaagaac

This study

miR-23b

tgtcaggcaaccgtattcacc gtgagtgctggtaat

cgtcagatgtccgagtagagg gggaacggcgatcacattgccaggg

[9]

miR-24

tgtcaggcaaccgtattcacc gtgagtggtctgttc

cgtcagatgtccgagtagagg gggaacggcgtggctcagttcagcag

[9]

miR-27a

tgtcaggcaaccgtattcacc gtgagtggtgcggaa

cgtcagatgtccgagtagagg gggaacggcgttcacagtggctaag

[9]

miR-296-3p

tgtcaggcaaccgtattcacc gtgagtggtaggarag

cgtcagatgtccgagtagagg gggaacggcggagggttgggtggaggc

This study

miR-29a

tgtcaggcaaccgtattcacc gtgagtggttaaccg

cgtcagatgtccgagtagagg gggaacggcgtagcaccatctgaaatcgg

[8]

miR-29b

tgtcaggcaaccgtattcacc gtgagtggtaacact

cgtcagatgtccgagtagagg gggaacggcgtagcaccatttgaaatcagt

This study

miR-29c

tgtcaggcaaccgtattcacc gtgagtggttaaccg

cgtcagatgtccgagtagagg gggaacggcgtagcaccatttgaaatcgg

This study

miR-30a

tgtcaggcaaccgtattcacc gtgagtggtcttcca

cgtcagatgtccgagtagagg gggaacggcgtgtaaacatcctcgactgg

This study

miR-30b

tgtcaggcaaccgtattcacc gtgagtggtagctga

cgtcagatgtccgagtagagg gggaacggcgtgtaaacatcctacactca

This study

miR-30c

tgtcaggcaaccgtattcacc gtgagtggtgctgag

cgtcagatgtccgagtagagg gggaacggcgtgtaaacatcctacactctc

This study

miR-326

tgtcaggcaaccgtattcacc gtgagtggtctggag

cgtcagatgtccgagtagagg gggaacggcgcctctgggcccttc

[9]

miR-371-5p

tgtcaggcaaccgtattcacc gtgagtggtagtgcc

cgtcagatgtccgagtagagg gggaacggcgactcaaactgtggg

This study

miR-423-3p

tgtcaggcaaccgtattcacc gtgagtggttgaggg

cgtcagatgtccgagtagagg gggaacggcgagctcggtctgaggc

[9]

miR-451

tgtcaggcaaccgtattcacc gtgagtggtaaactc

cgtcagatgtccgagtagagg gggaacggcgaaaccgttaccattactgag

[9]

miR-484

tgtcaggcaaccgtattcacc gtgagtggtatcggg

cgtcagatgtccgagtagagg gggaacggcgtcaggctcagtcccct

[9]

miR-886-5p

tgtcaggcaaccgtattcacc gtgagtggtccgctt

cgtcagatgtccgagtagagg gggaacggcgcgggtcggagttagctc

[8]

RNU6

tgtcaggcaaccgtattcacc aaaaatat

cgtcagatgtccgagtagagg gtgctcgcttcggcagc

This study

SNORD44

tgtcaggcaaccgtattcacc agtcag

cgtcagatgtccgagtagagg cctggatgatgataagcaaatg

This study

SNORD47

tgtcaggcaaccgtattcacc aacctc

cgtcagatgtccgagtagagg aaccaatgatgtaatgattctgc

This study

SNORD48

tgtcaggcaaccgtattcacc ggtcag

cgtcagatgtccgagtagagg agtgatgatgaccccaggta

This study

SNORD52

tgtcaggcaaccgtattcacc tcagaa

cgtcagatgtccgagtagagg gggaatgatgatttcacagact

This study

  1. The table comprises oligonucleotides for reverse transcription (RT6-'miRNA') as well as the specific primers for qPCR detection ('miRNA'-rev). MiRNA-specific nucleotides are indicated in bold letters, while binding sites of terminal primers (MP-fw: tgtcaggcaaccgtattcacc and MP-rev: cgtcagatgtccgagtagagg) are indicated in italic.