Table 5 The Hls syntenic region in Glycine max chromosomes 3 and 19
G. max chromosome | G. maxlocus | Location (bp) | Phytozome annotation | Cowpea SNP | LG | cM |
|---|---|---|---|---|---|---|
3 | Glyma03g34240 | Gm03: 41726178–41732134 | Protein phosphatase type 2A | 1_1209 | 4 | 27.90 cM |
3 | Glyma03g34420 | Gm03: 41865023–41866819 | UDP glycosyl transferase | 1_0678 | 4 | 27.60 cM |
3 | Glyma03g35490 | Gm03: 42670842–42672212 | Small nuclear ribonucleoprotein G | 1_0117 | 4 | 29.30 cM |
3 | Glyma03g36050 | Gm03: 43046482–43052190 | Glycosyl transferase | 1_1316 | 4 | 31.88 cM |
3 | Glyma03g36560 | Gm03: 43503702–43504835 | 60S ribosomal protein | 1_0157 | 4 | 32.21 cM |
3 | Glyma03g37080 | Gm03: 43844395–43846689 | Tetrahydrofolate dehydrogenase | 1_1013 | 4 | 34.09 cM |
3 | Glyma03g38320 | Gm03: 44664969–44672254 | EZA1 (SWINGER); transcription factor | N/A | N/A | N/A |
3 | Glyma03g38520 | Gm03: 44857426–44863787 | Cysteine proteinase | 1_0417 | 4 | 35.96 cM |
3 | Glyma03g38550 | Gm03: 44884051–44889833 | ATP-dependent RNA helicase | 1_0349 | 4 | 35.87 cM |
19 | Glyma19g36180 | Gm19: 43520883–43522581 | 60S ribosomal protein | 1_0106 | 4 | 25.57 cM |
19 | Glyma19g36250 | Gm19: 43594256–43596114 | 40S ribosomal protein S23 | 1_0061 | 2 | 24.10 cM |
19 | Glyma19g38130 | Gm19: 45131688–45132559 | Small nuclear ribonucleoprotein G | 1_0117 | 4 | 29.30 cM |
19 | Glyma19g38170 | Gm19: 45154806–45156026 | Ubiquitin extension protein 2 (UBQ2) | 1_0128 | 4 | 29.51 cM |
19 | Glyma19g38720 | Gm19: 45583969–45589659 | Glycosyl transferase | 1_1316 | 4 | 31.88 cM |
19 | Glyma19g39170 | Gm19: 45946131–45951841 | Protein phosphatase | 1_1349 | 3 | 39.80 cM |
19 | Glyma19g39240 | Gm19: 45993099–45993972 | 60S ribosomal protein L21 | 1_0157 | 4 | 32.21 cM |
19 | Glyma19g39570 | Gm19: 46201543–46203746 | 60S ribosomal protein L19 | 1_0038 | 4 | 33.57 cM |
19 | Glyma19g39710 | Gm19: 46301684–46304736 | Tetrahydrofolate dehydrogenase | 1_1013 | 4 | 34.09 cM |
19 | Glyma19g40080 | Gm19: 46544712–46546719 | 60S ribosomal protein L19 | 1_0038 | 4 | 33.57 cM |
19 | Glyma19g40090 | Gm19: 46547961–46552179 | Histidine kinase | 1_0910 | 4 | 34.09 cM |
19 | Glyma19g40300 | Gm19: 46736904–46743350 | Glycosyl hydrolase family | 1_0992 | 4 | 34.69 cM |
19 | Glyma19g40430 | Gm19: 46838345–46844721 | EZA1 (SWINGER); transcription factor | N/A | N/A | N/A |
19 | Glyma19g41120 | Gm19: 47437575–47443343 | Cysteine proteinase | 1_0417 | 4 | 35.96 cM |
19 | Glyma19g41150 | Gm19: 47465990–47471582 | ATP-dependent RNA helicase | 1_0349 | 4 | 35.87 cM |