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Table 1 AtGenExpress Experimental Series

From: Identification of metagenes and their Interactions through Large-scale Analysis of Arabidopsis Gene Expression Data

GSE Accession Number

Number of Samples

Experiment Description

Sampled Tissue

GSE5615

42

Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors

Leaf

GSE5616

18

Response to Phytophthorainfestans

Leaf

GSE5617

48

Light treatments

Shoot

GSE5620

36

Stress Treatments (Control plants)

Root and shoot

GSE5621

24

Stress Treatments (Cold stress)

Root and shoot

GSE5622

24

Stress Treatments (Osmotic stress)

Root and shoot

GSE5623

24

Stress Treatments (Salt stress)

Root and shoot

GSE5624

28

Stress Treatments (Drought stress)

Root and shoot

GSE5625

24

Stress Treatments (Genotoxic stress)

Root and shoot

GSE5626

28

Stress Treatments (UV-B stress)

Root and shoot

GSE5627

28

Stress Treatments (Wounding stress)

Root and shoot

GSE5628

32

Stress Treatments (Heat stress)

Root and shoot

GSE5629

24

Developmental series (seedlings and whole plants)

Shoot and whole plant

GSE5630

60

Developmental series (leaves)

Leaf (different stages)

GSE5631

21

Developmental series (roots)

Root (different stages)

GSE5632

66

Developmental series (flowers and pollen)

Flower (different stages)

GSE5633

42

Developmental series (shoots and stems)

Shoots and stems (different stages)

GSE5634

24

Developmental series (siliques and seeds)

Siliques and seeds (different stages)

GSE5684

12

Pathogen Series: Response to Botrytis cinerea infection

Mature leaf

GSE5685

32

Pathogen Series: Pseudomonas half leaf injection

Stage 10–11 rosette leaf

GSE5686

48

Pathogen Series: Response to Erysipheorontii infection

Mature leaf

GSE5687

4

Different temperature treatment of seeds

Seed

GSE5688

22

Response to sulfate limitation

Root

GSE5696

26

Effect of brassinosteroids in seedlings

Whole plant

GSE5697

8

Comparison of plant hormone-related mutants

Whole plant

GSE5698

12

Cytokinin treatment of seedlings

Whole plant

GSE5699

6

ARR21C overexpression

Whole plant

GSE700

8

Effect of ABA during seed imbibition

Seed

GSE701

12

Basic hormone treatment of seeds

Seed