|
SNPs
|
DH lines
|
INRA SP
|
INRA SY*
|
NCCCWA
|
3 pop.*
|
|---|
|
Monomorphic
|
352
|
390
|
367
|
351
|
346
|
|
Potentially duplicated
|
262
|
272
|
268
|
266
|
262
|
|
True
|
344
|
296
|
322
|
341
|
350
|
|
MAF < 0.05
|
27
|
7
|
11
|
22
|
21
|
|
0.05 > = MAF < 0.10
|
30
|
33
|
30
|
36
|
26
|
|
0.10 > = MAF < 0.20
|
58
|
55
|
51
|
73
|
74
|
|
0.20 > = MAF < 0.30
|
63
|
55
|
71
|
56
|
66
|
|
0.0 > = MAF < 0.40
|
85
|
68
|
77
|
67
|
66
|
|
0.40 > = MAF < 0.50
|
81
|
78
|
82
|
87
|
97
|
|
Total count
|
958
|
958
|
957
|
958
|
958
|
- SNPs were clustered into different categories based on their observed MAF in rainbow trout DH individuals and in the three population samples analysed
- * one snp was not considered for MAF calculation because of genotyping failure in all samples.
