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Table 2 Relative abundance of Unitrans annotated as having a predicted function in defense response in six libraries representing different elm leaf treatments

From: An elm EST database for identifying leaf beetle egg-induced defense genes

Gene description based on homology

# of Unitrans

# of ESTs

Best database match

E-value

Treatment (pptt)

     

EF

EF + F

E

F

MeJA

C

PR Proteins

 Class I chitinase

12

2111

Brassica napus

8e-58

161

70

28

13

133

33

 Disease resistance response protein

5

192

Arabidopsis thaliana

4e-25

-

1

-

-

1

-

 Glucan endo-1,3-beta-glucosidase

7

190

Prunus persica

2e-115

10

2

19

-

7

-

 Cysteine proteinase inhibitor

3

189

Vigna unguiculata

1e-26

5

5

-

-

6

5

 MLP-like protein

3

86

Arabidopsis thaliana

3e-42

86

10

2

3

8

3

 Pathogenesis-related protein

3

34

Medicago truncatula

5e-22

-

0.3

-

2

-

-

 MLO-like protein

2

4

Arabidopsis thaliana

4e-32

-

0.1

-

-

-

-

Phytohormone signaling

 Jasmonate ZIM-domain protein 3

1

111

Arabidopsis thaliana

3e-24

21

3

-

2

10

-

 Ethylene-responsive transcription factor

3

97

Arabidopsis thaliana

1e-41

-

3

5

2

4

9

 Auxin signaling F-box 2

2

33

Arabidopsis thaliana

3e-79

21

1

5

2

1

-

 ABC transporter G family member 40-

1

10

Arabidopsis thaliana

1e-62

-

0.1

-

0.1

1

-

 Regulatory protein NPR1

1

7

Arabidopsis thaliana

1e-25

9

-

0.2

0.3

-

-

 Coronatine-insensitive protein 1

1

8

Arabidopsis thaliana

9e-54

-

0.1

-

-

-

-

 Probable WRKY transcription factor 33

1

4

Arabidopsis thaliana

7e-28

16

-

-

-

-

-

 Ethylene-insensitive protein 2

1

2

Arabidopsis thaliana

9e-23

-

0.1

-

-

-

-

Jasmonic acid synthesis

 Allene oxide synthase

4

391

Linum usitatissimum

3e-39

10

12

9

13

30

5

 Peroxisomal acyl-coenzyme A oxidase 1

2

8

Arabidopsis thaliana

6e-35

5

0.1

-

-

-

-

Innate immunity

 Pre-mRNA-splicing factor SPF27

1

13

Arabidopsis thaliana

3e-52

-

0.5

-

-

-

-

 Pre-mRNA-processing factor 19

4

11

Arabidopsis thaliana

2e-29

-

0.3

-

-

1

-

 Cell division cycle 5-like protein

2

11

Arabidopsis thaliana

5e-50

-

0.3

-

-

-

-

 Protein pleiotropic regulatory locus 1

2

7

Arabidopsis thaliana

5e-75

-

0.3

-

-

-

-

 Serine / threonine-protein kinase PBS1

1

2

Arabidopsis thaliana

7e-42

-

0.1

-

-

-

-

Regulatory role in defense response

 Patatin-like protein

1

557

Solanum tuberosum

7e-83

47

13

9

15

48

-

 Heat shock protein 81

4

309

Arabidopsis thaliana

0

-

5

-

2

3

-

 Ankyrin repeat domain-containing protein 2

4

136

Arabidopsis thaliana

5e-59

-

3

9

19

4

-

 (+)-neomenthol dehydrogenase

3

29

Arabidopsis thaliana

2e-23

-

1

-

2

1

-

 Cyclic nucleotide-gated ion channel

3

15

Arabidopsis thaliana

2e-45

10

0.3

-

0.1

-

-

 Two pore calcium channel protein 1

2

5

Nicotiana tabacum

6e-31

-

0.2

-

-

-

-

Cell wall metabolism

 Cellulose synthase A catalytic subunit 3

3

17

Arabidopsis thaliana

5e-63

-

1

-

-

-

-

  1. Libraries: C (untreated control), E (artificial scratching & eggs transferred), EF (egg laying & feeding), F (feeding), MeJA (methyl jasmonate), mixed library EF + F. Relative Unitrans abundance calculated on library counts by parts per ten thousand (pptt) based on the annotation to Plant Swiss Prot (BLASTx, E-value ≤ 1e-20). Annotated transcripts filtered depending on their predicted function to the category “GO:0006952 defense response” of the Gene Ontology term. Bold = increased relative Unitrans abundance in egg-induced plants.
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BMC Genomics

ISSN: 1471-2164

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