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Table 1 Sequence information and related accessions

From: The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L.

GENE cTP1 cDNA (bp)2 gDNA (bp)3 DFCI TIGR
Accession4
Unigene Accession5 Associated Linkage Group (LG)6
IASMA7 Genoscope8
VvPSY1 YES 1317 3837 TC43355 Vvi.4169 LG4 LG4
VvPDS1 YES 1749 26291 CN007512 Vvi.17887 ND9 LG9
VvZDS1 YES 1752 12807 TC4818 Vvi.6755 LG14 LG14
VvLECY1 YES 1593 6670 TC49056 Vvi.11880 LG11 LG11
VvLUT1 YES 1692 5244 EC943050 None10 LG8 LG8
VvLBCY2 YES 1515 1515 TC50860 Vvi.2624 LG8 LG8
VvLBCY1 YES 1494 1494 EC925449 Vvi.18979 LG6 LG6
VvBCH1 YES 900 1660 TC42069 Vvi.2348 LG2 LG2
VvZEP1 YES 1977 7524 TC46508 Vvi.1307 LG7 LG7
VvVDE1 YES 1440 4971 TC47195 Vvi.1247 LG4 LG4
VvNCED3 YES 1833 1833 TC48377 Vvi.509 LG19 LG19
  1. 1 cTP: Softberry ProtComp (http://www.softberry.com/berry.phtml) prediction for a chloroplast transit peptide.
  2. 2 The size in base pairs of the cDNA copy of the gene from the predicted ATG to the predicted STOP codon;
  3. 3 The size in base pairs of the genomic copy of the gene from the predicted ATG to the predicted STOP codon;
  4. 4 The DFCI TIGR (http://www.tigr.org) accession number(s) of tentative consensus sequence corresponding to the isolated gene;
  5. 5 The Unigene (http://www.ncbi.nlm.nih.gov/unigene) accession numbers(s) corresponding to the isolated gene;
  6. 6 The grapevine linkage group (LG) associated with the isolated gene;
  7. 7 The heterozygous ENTAV115 Pinot noir genome sequence from IASMA (http://genomics.research.iasma.it/iasma/);
  8. 8 The homozygous PN40024 Pinot noir genome sequence from Genoscope (http://www.cns.fr/spip/Vitis-vinifera-whole-genome.html);
  9. 9 ND: Not determined; could not be mapped to the ENTAV115 genomic sequence.
  10. 10 None: No associated Vitis Unigene(s) (http://www.ncbi.nlm.nih.gov/UniGene/UGOrg.cgi?TAXID=29760).