Table 1 Experimental design and details of total read counts per individual (after quality control filtering of reads)
Family 1 | Family 2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
ID | IPN phenotype | QTL type | Library | Barcode | Total reads (Million) | ID | IPN phenotype | QTL type | Library | Barcode | Total reads (Million) |
Sire | Unknown | RS | 1 | GAAGC | 9.6 | Sire | Unknown | RS | 4 | GGGGA | 14.0 |
Dam | Unknown | RS | 1 | CTGAA | 9.2 | Dam | Unknown | RS | 4 | CGATA | 12.4 |
CR21 | Survivor | RR | 2 | GAAGC | 2.9 | BR01 | Survivor | RR | 5 | GAAGC | 5.7 |
CR22 | Survivor | RR | 2 | GCATT | 1.9 | BR02 | Survivor | RR | 5 | GTACA | 5.9 |
CR23 | Survivor | RR | 2 | GTGTG | 2.7 | BR03 | Survivor | RR | 5 | GTGTG | 6.1 |
CR24 | Survivor | RR | 2 | CTAGG | 1.7 | BR04 | Survivor | RR | 5 | GCGCC | 5.9 |
CR25 | Survivor | RR | 3 | GGGGA | 3.2 | BR06 | Survivor | RR | 6 | CTAGG | 5.2 |
CR26 | Survivor | RR | 3 | GTACA | 3.3 | BR07 | Survivor | RR | 6 | GGAAG | 6.4 |
CR27 | Survivor | RR | 3 | CGATA | 3.6 | BR08 | Survivor | RR | 6 | CGGCG | 5.1 |
CS31 | Mortality | SS | 2 | GGGGA | 2.4 | BS11 | Mortality | SS | 6 | CTGAA | 5.1 |
CS32 | Mortality | SS | 2 | GTACA | 2.5 | BS12 | Mortality | SS | 6 | GTACA | 5.6 |
CS33 | Mortality | SS | 2 | CGATA | 2.5 | BS13 | Mortality | SS | 6 | GTGTG | 5.4 |
CS34 | Mortality | SS | 3 | CTGAA | 3.1 | BS14 | Mortality | SS | 6 | GCGCC | 5.2 |
CS35 | Mortality | SS | 3 | GTGTG | 2.7 | BS16 | Mortality | SS | 5 | GCATT | 3.5 |
CS36 | Mortality | SS | 3 | GCGCC | 2.8 | BS17 | Mortality | SS | 5 | CTAGG | 3.5 |
CS37 | Mortality | SS | 3 | GGAAG | 1.6 | BS18 | Mortality | SS | 5 | GGAAG | 4.5 |