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Table 7 Population-wide association between two closely-linked SNPs in the IPN QTL region and mortality in a freshwater IPNV challenge (all associations significant at P < 0.05) a

From: Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon

2007-strip yeargroup (Ten QTL mapping families)
Mortality Proportion (SE)
SNP RR RS SS
SSA0139ECIG 0.00 (0.04) 0.22 (0.02) 0.42 (0.02)
RAD_HT01 0.00 (0.03) 0.24 (0.02) 0.54 (0.03)
2007-strip yeargroup (200 breeding program families)
SNP RR RS SS
SSA0139ECIG 0.12 (0.02) 0.24 (0.01) 0.47 (0.01)
RAD_HT01 0.11 (0.01) 0.25 (0.01) 0.63 (0.01)
2006-strip yeargroup (200 breeding program families)
SNP RR RS SS
SSA0139ECIG 0.10 (0.02) 0.20 (0.01) 0.66 (0.01)
RAD_HT01 0.10 (0.03) 0.17 (0.01) 0.60 (0.01)
All data combined
SNP RR RS SS
SSA0139ECIG 0.11 (0.01) 0.24 (0.01) 0.57 (0.01)
RAD_HT01 0.08 (0.01) 0.22 (0.01) 0.61 (0.01)
  1. a For SSA0139ECIG and RAD_HT01 the SNP alleles associated with resistance were thymine and the SNP alleles associated with susceptibility were guanine and adenine respectively.