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Figure 3 | BMC Genomics

Figure 3

From: IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes

Figure 3

Classification of M. tuberculosis Strains Based on IS 6110 Insertions. An UPGMA tree was generated from the distance matrix obtained using Variation of Information metric for 504 strains. Colors represent the main lineage 4 families present in the study, using Beijing strains (lineage 2) as an outgroup. Reference sequenced bacterial genomes are indicated by numbers on the side: 1- TB str Haarlem, 2- TB H37Rv, 3- TB H37Ra, 4- TB CDC-1551, 5-TB-C, 6- TB KZN_4207, 7- TB_KZN_R596, 8- TB_KZN_V2475, 9- TB_KZN_1435, 10- TB_KZN_605, 11- TB_F11, 12- TB GM_1503, 13- TB 98-R604, 14- TB T85, 15- TB 210, 16- TB 02_1987 (see Methods).

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BMC Genomics

ISSN: 1471-2164

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