Table 1 List of 91 CCCH genes identified in Populus and their sequence characteristics (bp, base pair; aa, amino acids; D, Dalton)
From: Comprehensive analysis of CCCH zinc finger family in poplar (Populus trichocarpa)
Gene symbol | Gene locus | Arabidopsis orthologs locus | ORF(bp) | Exons | Protein | Number of CCCH motif | ||
|---|---|---|---|---|---|---|---|---|
Length(aa) | Mol. Wt (kD) | PI | ||||||
PtC3H1 | POPTR_0007s01080.1 | AT1G03790.1 | 1152 | 1 | 383 | 43.28 | 7.25 | 2 |
PtC3H2 | POPTR_0017s04510.1 | AT1G03790.1 | 1149 | 1 | 382 | 43.02 | 8.04 | 2 |
PtC3H3 | POPTR_0002s21790.1 | AT1G04990.1 | 1353 | 7 | 450 | 48.77 | 8.06 | 5 |
PtC3H4 | POPTR_0014s15770.1 | AT1G04990.1 | 1341 | 7 | 446 | 48.23 | 8.06 | 5 |
PtC3H5 | POPTR_0009s04610.1 | AT1G07360.1 | 1596 | 4 | 531 | 59.51 | 7.38 | 1 |
PtC3H6 | POPTR_0009s04630.1 | AT1G07360.1 | 1596 | 4 | 531 | 59.30 | 7.54 | 1 |
PtC3H7 | POPTR_0004s23730.1 | AT1G10320.1 | 780 | 4 | 259 | 31.16 | 4.73 | 1 |
PtC3H8 | POPTR_0002s02670.1 | AT1G19860.1 | 1278 | 4 | 425 | 46.16 | 6.38 | 1 |
PtC3H9 | POPTR_0005s11800.1 | AT1G19860.1 | 1722 | 5 | 573 | 63.08 | 8.47 | 1 |
PtC3H10 | POPTR_0005s25760.1 | AT1G19860.1 | 1263 | 5 | 420 | 45.18 | 7.05 | 1 |
PtC3H11 | POPTR_0002s07810.1 | AT1G21580.1 | 6363 | 10 | 2120 | 23.27 | 8.85 | 5 |
PtC3H12 | POPTR_0005s20550.1 | AT1G21580.1 | 6228 | 11 | 2075 | 22.86 | 8.33 | 5 |
PtC3H13 | POPTR_0001s36810.1 | AT1G30460.1 | 2010 | 9 | 669 | 73.34 | 6.90 | 3 |
PtC3H14 | POPTR_0011s09220.1 | AT1G30460.2 | 837 | 2 | 278 | 30.73 | 8.19 | 3 |
PtC3H15 | POPTR_0001s02330.1 | AT1G32360.1 | 1134 | 2 | 377 | 40.01 | 6.97 | 3 |
PtC3H16 | POPTR_0003s09240.1 | AT1G32360.1 | 1173 | 2 | 390 | 42.10 | 6.77 | 3 |
PtC3H17 | POPTR_0004s09410.1 | AT1G66810.1 | 942 | 1 | 313 | 34.79 | 8.04 | 2 |
PtC3H18 | POPTR_0005s15100.1 | AT1G66810.1 | 1017 | 2 | 338 | 37.23 | 8.22 | 2 |
PtC3H19 | POPTR_0005s19930.1 | AT1G66810.1 | 888 | 3 | 295 | 32.01 | 9.19 | 1 |
PtC3H20 | POPTR_0010s12860.1 | AT1G68200.2 | 801 | 3 | 266 | 30.20 | 8.28 | 2 |
PtC3H21 | POPTR_0006s08100.1 | AT1G75340.1 | 1299 | 11 | 432 | 46.50 | 8.66 | 1 |
PtC3H22 | POPTR_0008s14320.1 | AT2G02160.1 | 2229 | 3 | 742 | 81.56 | 5.41 | 3 |
PtC3H23 | POPTR_0010s10850.1 | AT2G02160.1 | 2208 | 3 | 735 | 81.12 | 5.59 | 3 |
PtC3H24 | POPTR_0014s16340.1 | AT2G05160.1 | 1731 | 8 | 576 | 65.58 | 6.87 | 1 |
PtC3H25 | POPTR_0006s25080.1 | AT2G19810.1 | 1173 | 1 | 390 | 42.62 | 7.86 | 2 |
PtC3H26 | POPTR_0006s13510.1 | AT2G20280.1 | 1116 | 8 | 371 | 42.43 | 5.49 | 2 |
PtC3H27 | POPTR_0008s04540.1 | AT2G20280.1 | 1092 | 8 | 363 | 41.12 | 5.06 | 2 |
PtC3H28 | POPTR_0016s08500.1 | AT2G20280.1 | 1083 | 8 | 360 | 41.15 | 5.06 | 2 |
PtC3H29 | POPTR_0308s00200.1 | AT2G20280.1 | 1077 | 8 | 358 | 40.76 | 5.48 | 2 |
PtC3H30 | POPTR_0018s02840.1 | AT2G24830.1 | 1536 | 4 | 511 | 56.91 | 4.83 | 1 |
PtC3H31 | POPTR_0011s05550.1 | AT2G33835.1 | 2010 | 5 | 669 | 73.52 | 7.52 | 1 |
PtC3H32 | POPTR_0008s06940.1 | AT2G40140.1 | 2040 | 1 | 679 | 73.87 | 7.68 | 2 |
PtC3H33 | POPTR_0010s19520.1 | AT2G40140.1 | 1839 | 4 | 612 | 66.62 | 6.77 | 2 |
PtC3H34 | POPTR_0012s12760.1 | AT2G40140.1 | 2025 | 1 | 655 | 71.58 | 7.01 | 2 |
PtC3H35 | POPTR_0001s27370.1 | AT2G41900.1 | 2133 | 1 | 710 | 77.59 | 6.94 | 2 |
PtC3H36 | POPTR_0006s05240.1 | AT2G41900.1 | 2208 | 1 | 735 | 79.81 | 6.40 | 2 |
PtC3H37 | POPTR_0006s05250.1 | AT2G41900.1 | 2106 | 1 | 701 | 76.47 | 6.36 | 2 |
PtC3H38 | POPTR_0009s06580.1 | AT2G41900.1 | 2187 | 1 | 728 | 79.28 | 6.50 | 2 |
PtC3H39 | POPTR_0016s05410.1 | AT2G41900.1 | 2199 | 1 | 732 | 79.67 | 6.50 | 2 |
PtC3H40 | POPTR_0017s06030.1 | AT2G47680.1 | 3171 | 13 | 1056 | 119.38 | 6.77 | 2 |
PtC3H41 | POPTR_0013s08490.1 | AT3G02830.1 | 1560 | 11 | 519 | 57.42 | 8.42 | 4 |
PtC3H42 | POPTR_0013s08500.1 | AT3G02830.1 | 318 | 2 | 105 | 11.16 | 7.34 | 1 |
PtC3H43 | POPTR_0019s08030.1 | AT3G02830.1 | 1338 | 7 | 445 | 48.48 | 8.51 | 5 |
PtC3H44 | POPTR_0008s22730.1 | AT3G06410.1 | 1434 | 7 | 477 | 50.53 | 8.62 | 5 |
PtC3H45 | POPTR_0003s06730.1 | AT3G08505.1 | 1548 | 10 | 515 | 59.51 | 9.26 | 2 |
PtC3H46 | POPTR_0004s14200.1 | AT3G08505.1 | 1395 | 6 | 464 | 52.58 | 7.66 | 4 |
PtC3H47 | POPTR_0009s06730.1 | AT3G08505.1 | 1155 | 8 | 384 | 42.48 | 8.10 | 4 |
PtC3H48 | POPTR_0016s04690.1 | AT3G12130.1 | 858 | 3 | 285 | 30.04 | 9.91 | 3 |
PtC3H49 | POPTR_0008s07980.1 | AT3G12680.1 | 1425 | 11 | 474 | 51.29 | 8.27 | 5 |
PtC3H50 | POPTR_0010s18390.1 | AT3G12680.1 | 1599 | 12 | 532 | 57.88 | 8.08 | 6 |
PtC3H51 | POPTR_0005s06240.1 | AT3G18640.1 | 2577 | 3 | 858 | 95.28 | 7.73 | 3 |
PtC3H52 | POPTR_0007s03970.1 | AT3G18640.1 | 2583 | 3 | 860 | 95.64 | 8.69 | 3 |
PtC3H53 | POPTR_0003s06010.1 | AT3G19360.1 | 795 | 2 | 264 | 28.80 | 9.99 | 3 |
PtC3H54 | POPTR_0004s17670.1 | AT3G19360.1 | 1155 | 2 | 384 | 42.89 | 8.48 | 3 |
PtC3H55 | POPTR_0009s13310.1 | AT3G19360.1 | 1026 | 2 | 341 | 38.08 | 7.94 | 3 |
PtC3H56 | POPTR_0007s02620.1 | AT3G21810.1 | 1314 | 11 | 437 | 49.05 | 9.09 | 1 |
PtC3H57 | POPTR_0001s34600.1 | AT3G27700.1 | 2946 | 5 | 981 | 107.01 | 6.94 | 1 |
PtC3H58 | POPTR_0017s10830.1 | AT3G27700.1 | 2961 | 5 | 986 | 107.25 | 7.20 | 1 |
PtC3H59 | POPTR_0009s04950.1 | AT3G47120.1 | 1053 | 4 | 350 | 41.27 | 8.97 | 1 |
PtC3H60 | POPTR_0012s09400.1 | AT3G48440.1 | 1434 | 6 | 477 | 53.20 | 5.48 | 5 |
PtC3H61 | POPTR_0015s10050.1 | AT3G48440.1 | 1494 | 7 | 497 | 56.30 | 5.13 | 5 |
PtC3H62 | POPTR_0005s11920.1 | AT3G51120.1 | 4575 | 11 | 1524 | 167.73 | 5.98 | 1 |
PtC3H63 | POPTR_0004s16880.1 | AT3G51120.1 | 3339 | 9 | 1112 | 121.35 | 7.18 | 1 |
PtC3H64 | POPTR_0007s13760.1 | AT3G51120.1 | 4818 | 10 | 1605 | 176.29 | 5.97 | 1 |
PtC3H65 | POPTR_0007s13990.1 | AT3G51180.1 | 1674 | 4 | 557 | 61.21 | 9.16 | 1 |
PtC3H66 | POPTR_0001s05760.1 | AT3G51950.1 | 2124 | 8 | 707 | 77.04 | 6.17 | 1 |
PtC3H67 | POPTR_0001s26250.1 | AT3G51950.1 | 1911 | 8 | 636 | 69.96 | 6.43 | 1 |
PtC3H68 | POPTR_0003s20310.1 | AT3G51950.1 | 2118 | 8 | 705 | 77.16 | 6.15 | 1 |
PtC3H69 | POPTR_0009s05520.1 | AT3G51950.1 | 2205 | 8 | 734 | 81.19 | 5.93 | 1 |
PtC3H70 | POPTR_0012s13800.1 | AT4G25440.1 | 1359 | 9 | 452 | 48.96 | 7.68 | 2 |
PtC3H71 | POPTR_0015s13760.1 | AT4G25440.1 | 1365 | 9 | 454 | 49.48 | 7.49 | 2 |
PtC3H72 | POPTR_0018s04720.1 | AT4G29190.1 | 1155 | 1 | 384 | 42.18 | 7.33 | 2 |
PtC3H73 | POPTR_0009s12840.1 | AT4G38890.1 | 2115 | 10 | 704 | 77.83 | 6.58 | 1 |
PtC3H74 | POPTR_0001s05070.1 | AT5G06770.1 | 915 | 3 | 304 | 32.51 | 9.80 | 3 |
PtC3H75 | POPTR_0003s21780.1 | AT5G06770.1 | 948 | 3 | 315 | 33.72 | 9.77 | 3 |
PtC3H76 | POPTR_0006s20620.1 | AT5G06770.1 | 1008 | 4 | 335 | 35.18 | 9.89 | 3 |
PtC3H77 | POPTR_0016s04590.1 | AT5G06770.1 | 855 | 3 | 284 | 29.92 | 9.79 | 3 |
PtC3H78 | POPTR_0001s26240.1 | AT5G12440.1 | 2025 | 7 | 674 | 74.81 | 5.72 | 1 |
PtC3H79 | POPTR_0001s28300.1 | AT5G12440.1 | 663 | 1 | 220 | 24.13 | 7.47 | 1 |
PtC3H80 | POPTR_0007s12500.1 | AT5G12440.1 | 291 | 1 | 96 | 10.76 | 8.22 | 1 |
PtC3H81 | POPTR_0001s26560.1 | AT5G12850.1 | 2028 | 1 | 675 | 73.98 | 6.76 | 2 |
PtC3H82 | POPTR_0009s05810.1 | AT5G12850.1 | 1887 | 1 | 628 | 69.16 | 6.72 | 2 |
PtC3H83 | POPTR_0010s02320.1 | AT5G18550.1 | 1371 | 7 | 456 | 48.77 | 8.53 | 5 |
PtC3H84 | POPTR_0002s00480.1 | AT5G42820.1 | 822 | 1 | 273 | 32.47 | 8.99 | 2 |
PtC3H85 | POPTR_0004s20030.1 | AT5G42820.1 | 963 | 5 | 320 | 37.42 | 9.61 | 2 |
PtC3H86 | POPTR_0005s27940.1 | AT5G42820.1 | 819 | 1 | 272 | 32.24 | 9.47 | 2 |
PtC3H87 | POPTR_0006s11790.1 | AT5G42820.1 | 936 | 4 | 311 | 36.25 | 9.40 | 2 |
PtC3H88 | POPTR_0006s15670.1 | AT5G56900.2 | 1821 | 9 | 606 | 67.52 | 6.90 | 2 |
PtC3H89 | POPTR_0006s15080.1 | AT5G56930.1 | 2787 | 7 | 928 | 101.34 | 8.46 | 3 |
PtC3H90 | POPTR_0001s25960.1 | AT5G58620.1 | 2115 | 1 | 704 | 76.38 | 6.14 | 2 |
PtC3H91 | POPTR_0009s05150.1 | AT5G58620.1 | 2067 | 1 | 703 | 74.40 | 5.97 | 2 |