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Table 1 List of 91 CCCH genes identified in Populus and their sequence characteristics (bp, base pair; aa, amino acids; D, Dalton)

From: Comprehensive analysis of CCCH zinc finger family in poplar (Populus trichocarpa)

Gene symbol Gene locus Arabidopsis orthologs locus ORF(bp) Exons Protein Number of CCCH motif
Length(aa) Mol. Wt (kD) PI
PtC3H1 POPTR_0007s01080.1 AT1G03790.1 1152 1 383 43.28 7.25 2
PtC3H2 POPTR_0017s04510.1 AT1G03790.1 1149 1 382 43.02 8.04 2
PtC3H3 POPTR_0002s21790.1 AT1G04990.1 1353 7 450 48.77 8.06 5
PtC3H4 POPTR_0014s15770.1 AT1G04990.1 1341 7 446 48.23 8.06 5
PtC3H5 POPTR_0009s04610.1 AT1G07360.1 1596 4 531 59.51 7.38 1
PtC3H6 POPTR_0009s04630.1 AT1G07360.1 1596 4 531 59.30 7.54 1
PtC3H7 POPTR_0004s23730.1 AT1G10320.1 780 4 259 31.16 4.73 1
PtC3H8 POPTR_0002s02670.1 AT1G19860.1 1278 4 425 46.16 6.38 1
PtC3H9 POPTR_0005s11800.1 AT1G19860.1 1722 5 573 63.08 8.47 1
PtC3H10 POPTR_0005s25760.1 AT1G19860.1 1263 5 420 45.18 7.05 1
PtC3H11 POPTR_0002s07810.1 AT1G21580.1 6363 10 2120 23.27 8.85 5
PtC3H12 POPTR_0005s20550.1 AT1G21580.1 6228 11 2075 22.86 8.33 5
PtC3H13 POPTR_0001s36810.1 AT1G30460.1 2010 9 669 73.34 6.90 3
PtC3H14 POPTR_0011s09220.1 AT1G30460.2 837 2 278 30.73 8.19 3
PtC3H15 POPTR_0001s02330.1 AT1G32360.1 1134 2 377 40.01 6.97 3
PtC3H16 POPTR_0003s09240.1 AT1G32360.1 1173 2 390 42.10 6.77 3
PtC3H17 POPTR_0004s09410.1 AT1G66810.1 942 1 313 34.79 8.04 2
PtC3H18 POPTR_0005s15100.1 AT1G66810.1 1017 2 338 37.23 8.22 2
PtC3H19 POPTR_0005s19930.1 AT1G66810.1 888 3 295 32.01 9.19 1
PtC3H20 POPTR_0010s12860.1 AT1G68200.2 801 3 266 30.20 8.28 2
PtC3H21 POPTR_0006s08100.1 AT1G75340.1 1299 11 432 46.50 8.66 1
PtC3H22 POPTR_0008s14320.1 AT2G02160.1 2229 3 742 81.56 5.41 3
PtC3H23 POPTR_0010s10850.1 AT2G02160.1 2208 3 735 81.12 5.59 3
PtC3H24 POPTR_0014s16340.1 AT2G05160.1 1731 8 576 65.58 6.87 1
PtC3H25 POPTR_0006s25080.1 AT2G19810.1 1173 1 390 42.62 7.86 2
PtC3H26 POPTR_0006s13510.1 AT2G20280.1 1116 8 371 42.43 5.49 2
PtC3H27 POPTR_0008s04540.1 AT2G20280.1 1092 8 363 41.12 5.06 2
PtC3H28 POPTR_0016s08500.1 AT2G20280.1 1083 8 360 41.15 5.06 2
PtC3H29 POPTR_0308s00200.1 AT2G20280.1 1077 8 358 40.76 5.48 2
PtC3H30 POPTR_0018s02840.1 AT2G24830.1 1536 4 511 56.91 4.83 1
PtC3H31 POPTR_0011s05550.1 AT2G33835.1 2010 5 669 73.52 7.52 1
PtC3H32 POPTR_0008s06940.1 AT2G40140.1 2040 1 679 73.87 7.68 2
PtC3H33 POPTR_0010s19520.1 AT2G40140.1 1839 4 612 66.62 6.77 2
PtC3H34 POPTR_0012s12760.1 AT2G40140.1 2025 1 655 71.58 7.01 2
PtC3H35 POPTR_0001s27370.1 AT2G41900.1 2133 1 710 77.59 6.94 2
PtC3H36 POPTR_0006s05240.1 AT2G41900.1 2208 1 735 79.81 6.40 2
PtC3H37 POPTR_0006s05250.1 AT2G41900.1 2106 1 701 76.47 6.36 2
PtC3H38 POPTR_0009s06580.1 AT2G41900.1 2187 1 728 79.28 6.50 2
PtC3H39 POPTR_0016s05410.1 AT2G41900.1 2199 1 732 79.67 6.50 2
PtC3H40 POPTR_0017s06030.1 AT2G47680.1 3171 13 1056 119.38 6.77 2
PtC3H41 POPTR_0013s08490.1 AT3G02830.1 1560 11 519 57.42 8.42 4
PtC3H42 POPTR_0013s08500.1 AT3G02830.1 318 2 105 11.16 7.34 1
PtC3H43 POPTR_0019s08030.1 AT3G02830.1 1338 7 445 48.48 8.51 5
PtC3H44 POPTR_0008s22730.1 AT3G06410.1 1434 7 477 50.53 8.62 5
PtC3H45 POPTR_0003s06730.1 AT3G08505.1 1548 10 515 59.51 9.26 2
PtC3H46 POPTR_0004s14200.1 AT3G08505.1 1395 6 464 52.58 7.66 4
PtC3H47 POPTR_0009s06730.1 AT3G08505.1 1155 8 384 42.48 8.10 4
PtC3H48 POPTR_0016s04690.1 AT3G12130.1 858 3 285 30.04 9.91 3
PtC3H49 POPTR_0008s07980.1 AT3G12680.1 1425 11 474 51.29 8.27 5
PtC3H50 POPTR_0010s18390.1 AT3G12680.1 1599 12 532 57.88 8.08 6
PtC3H51 POPTR_0005s06240.1 AT3G18640.1 2577 3 858 95.28 7.73 3
PtC3H52 POPTR_0007s03970.1 AT3G18640.1 2583 3 860 95.64 8.69 3
PtC3H53 POPTR_0003s06010.1 AT3G19360.1 795 2 264 28.80 9.99 3
PtC3H54 POPTR_0004s17670.1 AT3G19360.1 1155 2 384 42.89 8.48 3
PtC3H55 POPTR_0009s13310.1 AT3G19360.1 1026 2 341 38.08 7.94 3
PtC3H56 POPTR_0007s02620.1 AT3G21810.1 1314 11 437 49.05 9.09 1
PtC3H57 POPTR_0001s34600.1 AT3G27700.1 2946 5 981 107.01 6.94 1
PtC3H58 POPTR_0017s10830.1 AT3G27700.1 2961 5 986 107.25 7.20 1
PtC3H59 POPTR_0009s04950.1 AT3G47120.1 1053 4 350 41.27 8.97 1
PtC3H60 POPTR_0012s09400.1 AT3G48440.1 1434 6 477 53.20 5.48 5
PtC3H61 POPTR_0015s10050.1 AT3G48440.1 1494 7 497 56.30 5.13 5
PtC3H62 POPTR_0005s11920.1 AT3G51120.1 4575 11 1524 167.73 5.98 1
PtC3H63 POPTR_0004s16880.1 AT3G51120.1 3339 9 1112 121.35 7.18 1
PtC3H64 POPTR_0007s13760.1 AT3G51120.1 4818 10 1605 176.29 5.97 1
PtC3H65 POPTR_0007s13990.1 AT3G51180.1 1674 4 557 61.21 9.16 1
PtC3H66 POPTR_0001s05760.1 AT3G51950.1 2124 8 707 77.04 6.17 1
PtC3H67 POPTR_0001s26250.1 AT3G51950.1 1911 8 636 69.96 6.43 1
PtC3H68 POPTR_0003s20310.1 AT3G51950.1 2118 8 705 77.16 6.15 1
PtC3H69 POPTR_0009s05520.1 AT3G51950.1 2205 8 734 81.19 5.93 1
PtC3H70 POPTR_0012s13800.1 AT4G25440.1 1359 9 452 48.96 7.68 2
PtC3H71 POPTR_0015s13760.1 AT4G25440.1 1365 9 454 49.48 7.49 2
PtC3H72 POPTR_0018s04720.1 AT4G29190.1 1155 1 384 42.18 7.33 2
PtC3H73 POPTR_0009s12840.1 AT4G38890.1 2115 10 704 77.83 6.58 1
PtC3H74 POPTR_0001s05070.1 AT5G06770.1 915 3 304 32.51 9.80 3
PtC3H75 POPTR_0003s21780.1 AT5G06770.1 948 3 315 33.72 9.77 3
PtC3H76 POPTR_0006s20620.1 AT5G06770.1 1008 4 335 35.18 9.89 3
PtC3H77 POPTR_0016s04590.1 AT5G06770.1 855 3 284 29.92 9.79 3
PtC3H78 POPTR_0001s26240.1 AT5G12440.1 2025 7 674 74.81 5.72 1
PtC3H79 POPTR_0001s28300.1 AT5G12440.1 663 1 220 24.13 7.47 1
PtC3H80 POPTR_0007s12500.1 AT5G12440.1 291 1 96 10.76 8.22 1
PtC3H81 POPTR_0001s26560.1 AT5G12850.1 2028 1 675 73.98 6.76 2
PtC3H82 POPTR_0009s05810.1 AT5G12850.1 1887 1 628 69.16 6.72 2
PtC3H83 POPTR_0010s02320.1 AT5G18550.1 1371 7 456 48.77 8.53 5
PtC3H84 POPTR_0002s00480.1 AT5G42820.1 822 1 273 32.47 8.99 2
PtC3H85 POPTR_0004s20030.1 AT5G42820.1 963 5 320 37.42 9.61 2
PtC3H86 POPTR_0005s27940.1 AT5G42820.1 819 1 272 32.24 9.47 2
PtC3H87 POPTR_0006s11790.1 AT5G42820.1 936 4 311 36.25 9.40 2
PtC3H88 POPTR_0006s15670.1 AT5G56900.2 1821 9 606 67.52 6.90 2
PtC3H89 POPTR_0006s15080.1 AT5G56930.1 2787 7 928 101.34 8.46 3
PtC3H90 POPTR_0001s25960.1 AT5G58620.1 2115 1 704 76.38 6.14 2
PtC3H91 POPTR_0009s05150.1 AT5G58620.1 2067 1 703 74.40 5.97 2
  1. Molecular Wt and PI of Populus CCCH proteins have been calculated using DNAman software.