Table 6 Expression cluster enrichment analysis
Expression clusters over-represented in "dauer enriched" and "exit enriched genes" in C. elegans and P. pacificus | |||||
|---|---|---|---|---|---|
Expression clusters related to dauer larvae, stress response and starvation / feeding | |||||
Sl.No. | Expression Cluster | cel_dauer | cel_exit | ppa_dauer | ppa_exit |
1 | Wang_Kim_WBPaper00005859_DauerEnriched | 10.45 | 0 | 0 | 0 |
2 | Wang_Kim_WBPaper00005859_EarlyGenes | 0 | 5.99 | 0 | 10.67 |
3 | Wang_Kim_WBPaper00005859_ClimbingGenes | 0 | 14.58 | 0 | 4.62 |
4 | Wang_Kim_WBPaper00005859_LateGenes | 0 | 63.09 | 0 | 0 |
5 | WBPaper00024393:strongly_regulated_dauer_genes_UP | 1.39 | 0 | 0 | 0 |
6 | WBPaper00024393:strongly_regulated_dauer_genes_DOWN | 0 | 8.49 | 0 | 10.85 |
7 | WBPaper00034757:up_by_oxidative_stress | 4.2 | 0 | 0 | 0 |
8 | WBPaper00034757:down_by_oxidative_stress | 0 | 6.47 | 0 | 6.82 |
9 | WBPaper00035227:heat_shock_regulated | 9.74 | 0 | 0 | 0 |
10 | WBPaper00035873:dpy-10_regulated | 0 | 25.06 | 0 | 3.89 |
11 | WBPaper00035873:dpy-9_regulated | 0 | 2.02 | 0 | 1.57 |
12 | WBPaper00035873:osm-11_regulated | 0 | 2.02 | 0 | 1.57 |
13 | WBPaper00035873:osm-7_regulated | 0 | 2.4 | 0 | 2.07 |
14 | WBPaper00035873:osm-8_regulated | 0 | 42.83 | 0 | 4.45 |
15 | WBPaper00035873:osmotically_regulated | 0 | 0 | 0 | 4.65 |
16 | WBPaper00032948:StarveUp2 | 6.17 | 0 | 2.5 | 0 |
17 | WBPaper00032948:StarveUp3 | 7.15 | 0 | 0 | 0 |
18 | WBPaper00032948:StarveUp4 | 10.45 | 0 | 0 | 0 |
19 | WBPaper00032948:FedUp | 0 | 78.95 | 0 | 5.12 |
20 | WBPaper00032948:MoltOssilate | 0 | 74.78 | 0 | 0 |
21 | WBPaper00032062:age_regulated_genes | 0 | 5.37 | 0 | 4.75 |
Expression clusters related to to pathogen response, RNAi machinery etc. | |||||
Sl.No. | Expression Cluster | cel_dauer | cel_exit | ppa_dauer | ppa_exit |
22 | WBPaper00028482:PA14_upregulate | 0 | 0 | 0 | 2.03 |
23 | WBPaper00028789:PA14_vs_gacA_downregulated_4hr | 0 | 5.9 | 0 | 0 |
24 | WBPaper00028789:PA14_vs_gacA_downregulated_8hr | 0 | 6.7 | 0 | 0 |
25 | WBPaper00028789:PA14_vs_OP50_downregulated_8hr | 0 | 6.85 | 0 | 1.81 |
26 | WBPaper00028789:PA14_vs_OP50_upregulated_4hr | 0 | 0 | 0 | 1.4 |
27 | WBPaper00028789:PA14_vs_OP50_upregulated_8hr | 0 | 0 | 0 | 2.02 |
28 | WBPaper00030985:Enterococcus_faecalis_upregulated | 0 | 0 | 0 | 1.6 |
29 | WBPaper00028789:pmk-1_downregulated | 0 | 0 | 0 | 1.46 |
30 | WBPaper00029437:dcr-1_upregulated | 3.13 | 0 | 0 | 0 |
31 | WBPaper00029437:rde-4_upregulated | 0 | 0 | 0 | 1.69 |
32 | WBPaper00027111:eri-1(mg366)_downregulated | 0 | 2.23 | 0 | 0 |
33 | WBPaper00027111:rde-3(r459)_upregulated | 0 | 0 | 0 | 1.52 |
34 | WBPaper00035892:KIM5_regulated | 0 | 0 | 0 | 4.79 |
35 | WBPaper00035892:KIM5_vs_OP50_Up | 0 | 0 | 0 | 2.36 |
Tissue specific, and other expression clusters | |||||
Sl.No. | Expression Cluster | cel_dauer | cel_exit | ppa_dauer | ppa_exit |
36 | WBPaper00030839:Embryo_Pan_Neuronal | 0 | 0 | 6.67 | 0 |
37 | WBPaper00030839:Larval_Pan_Neuronal | 4.75 | 0 | 2.71 | 0 |
38 | WBPaper00031003:0hr_muscle_depleted | 0 | 2.99 | 0 | 0 |
39 | WBPaper00031003:24hr_muscle_depleted | 0 | 2.11 | 0 | 2.73 |
40 | WBPaper00031003:total_muscle_depleted | 0 | 2.29 | 0 | 0 |
41 | WBPaper00031003:total_muscle_enriched | 0 | 0 | 2.42 | 0 |
42 | WBPaper00031532:Larva_Pan_Neuronal_Depleted | 0 | 28.03 | 0 | 11.41 |
43 | WBPaper00031532:Larva_Pan_Neuronal_Enriched | 2.48 | 0 | 4.69 | 0 |
44 | WBPaper00026980:intestine_enriched | 0 | 0 | 3.46 | 1.5 |
45 | WBPaper00024671:AFD_AWB_vs_unsorted_downregulated | 0 | 3.02 | 0 | 3.59 |
46 | WBPaper00031832:slr-2_regulated | 0 | 0 | 0 | 2.75 |
47 | WBPaper00033101:spr-5_regulated | 0 | 6.44 | 0 | 0 |
48 | WBPaper00034739:N2lessDR1350 | 0 | 39.13 | 0 | 0 |
49 | WBPaper00034739:RIL17lessRIL14 | 0 | 18.11 | 0 | 0 |
50 | WBPaper00035905:FBF-1_Associated | 0 | 0 | 5.54 | 0 |
51 | WBPaper00037611:RNP-8-associated | 0 | 0 | 4.92 | 0 |
52 | WBPaper00025032:PAL-1_target_genes | 0 | 2.58 | 0 | 0 |