Patterns of non-homologous recombination. GenoPlast was used to infer how much material was gained and lost on each branch of the ClonalFrame tree. Each row corresponds to a branch of the tree as shown, gain is shown on the left and loss on the right. The numbers indicate the average amount of material gained and lost on each branch, measured in Kbp. The colors indicate how high the amounts gained or lost are relative to their expectations under a model of fixed gain and loss rates, where amounts gained and lost would be proportional to branch lengths. These colors are measured on a logarithmic relative scale as indicated at the top-left.