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Table 1 Genomes used in this study

From: Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

Strain

Pathotype

Phylogroup

Serotype

Length (Kbp)

Citation

ATCC8739

Commensal

A

O146

4743

[25]

HS

Commensal

A

O9:H4

4635

[26]

BL21

Commensal

A

O7

4568

[27]

REL606

Commensal

A

O7

4621

[27]

K-12/BW2952

Commensal

A

O16

4570

[28]

K-12/DH10B

Commensal

A

O16

4678

[29]

K-12/MG1655

Commensal

A

O16

4631

[30]

K-12/W3110

Commensal

A

O16

4638

[31]

IAI1

Commensal

B1

O8

4692

[23]

SE11

Commensal

B1

O158:H28

4879

[32]

55989

EAEC

B1

O128:H2

5154

[23]

12009

EHEC

B1

O103:H2

5441

[33]

E24377A

ETEC

B1

O139:H28

4971

[26]

11128

EHEC

B1

O111:H-

5363

[33]

11368

EHEC

B1

O26:H11

5689

[33]

EC4115

EHEC

E

O157:H7

5564

[34]

TW14359

EHEC

E

O157:H7

5520

[35]

EDL933

EHEC

E

O157:H7

5520

[36]

Sakai

EHEC

E

O157:H7

5490

[37]

CB9615

EPEC

E

O55:H7

5378

[38]

APEC01

ExPEC

B2

O1:K12:H7

5074

[39]

UTI89

ExPEC

B2

O18:K1:H7

5057

[40]

S88

ExPEC

B2

O45:K1

5024

[23]

CFT073

ExPEC

B2

O6:K2:H1

5223

[41]

ED1A

Commensal

B2

O81

5201

[23]

536

UPEC

B2

O6:K15:H31

4930

[42]

E2348/69

EPEC

B2

O45:K1

4957

[43]