Whole genome sequencing analysis of Plasmodium vivax using whole genome capture

BMC Genomics

Table 3 SNVs identifiedby whole genome sequencing

Isolate	Isolate	MSP7 gene family		All MSP gene families		SERA gene family		Metabolic genes
		Syn	Non-syn	Syn	Non-syn	Syn	Non-syn	Syn	Non-syn
IQ07^a	16861	1.82	1.64	2.7	4.1	7.07	5.54	0.45	0.6
Acre3^b	0	na	na	na	na	na	na	na	na
SA-94	17871	1.93	1.57	3.2	4.41	6.94	5.6	0.37	0.59
SA-95	18916	2.03	1.77	2.48	4.1	7.3	5.03	0.35	0.64
SA-96	17946	1.79	1.81	3.23	4.21	6.64	5.61	0.54	0.7
SA-97	18321	1.86	1.34	2.81	4.19	7.23	5.91	0.44	0.68
SA-98	16596	1.55	1.28	2.89	3.98	6.94	5.04	0.49	0.68

Abbreviations: SNV, single nucleotide variant; Syn, synonymous; Non-syn, non-synonymous; na, not available.
^apositive control - leukocyte filtered, ^bnegative control.

ISSN: 1471-2164