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Table 2 Expression data of miRNAs differentially expressed during the three filling stages

From: Identification of novel MiRNAs and MiRNA expression profiling during grain development in indica rice

Pattern of regulation miRNA name MiRNA expression signals (average)b Fold changeb Fold changeb p-valuea,c
G1 G2 G3 (G2/G1) (G3/G2)
Up miR1850 56 53 293 0.95 5.53 7.40E-03
  miR1874-5p 349 1140 1266 3.27 1.11 2.29E-05
  miR1862e 133 378 384 2.84 1.02 3.69E-03
  miR1862d 247 526 656 2.13 1.25 3.17E-03
  miR1874-3p 2473 4684 5507 1.89 1.18 3.57E-03
  miR1435 86 138 357 1.60 2.59 2.24E-03
  miR1881 36 65 88 1.81 1.35 1.78E-03
  *miR1867 109 219 186 2.01 0.85 3.14E-03
  miR1884b 99 213 168 2.15 0.79 3.41E-03
Down miR171a 118 58 42 0.49 0.72 1.13E-03
  miR171b-f 451 253 182 0.56 0.72 4.64E-03
  miR530-5p 4522 3286 1514 0.73 0.46 4.18E-04
  miR160f 125 38 31 0.30 0.82 1.27E-03
  miR160a-d 251 69 38 0.27 0.55 8.01E-04
  miR160e 275 68 48 0.25 0.71 1.16E-03
  miR444b.2 770 443 63 0.58 0.14 3.68E-04
  *miR1873 123 65 47 0.52 0.72 5.21E-05
  miR2055 138 140 97 1.01 0.69 5.23E-03
  1. *: The probe sequence is on the same precursor of this miRNA, but had a ±2 nt range from the annotated miRNA sequence.
  2. a: p-value < 0.01.
  3. b: Mean levels averaged from three biological replicates; fold changes in miRNA levels were compared from the milky (G1) to hard dough (G3) stages and selected as less than 0.5 or more than 2.0 (from G1 to G3).
  4. c: Signal values <100 (lower than three times the background signal) were not considered for variance analysis.