Skip to main content

Table 4 Frequency of di- and tri-nucleotide EST-SSR repeat motifs in A. mongolicus

From: De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus

Repeat motif

Repeat numbers

Total

(%)

5

6

7

8

9

10

>10

AC/GT

-

38

16

9

5

7

17

92

9.31

AG/CT

-

73

42

30

28

15

76

264

26.72

AT/AT

-

34

15

14

6

4

4

77

7.79

CG/CG

-

1

-

-

-

-

-

1

0.10

AAC/GTT

39

22

9

6

3

5

11

95

9.62

AAG/CTT

63

34

18

6

9

-

6

136

13.77

AAT/ATT

45

29

7

5

-

1

-

87

8.81

ACC/GGT

22

8

2

7

3

2

-

44

4.45

ACG/CTG

5

3

2

-

-

-

-

10

1.01

ACT/ATG

22

13

8

1

2

-

11

57

5.77

AGC/CGT

19

6

5

2

-

1

-

33

3.34

AGG/CCT

25

5

2

-

1

-

2

35

3.54

AGT/ATC

23

15

5

4

1

1

5

54

5.47

CCG/CGG

3

-

-

-

-

-

-

3

0.30

Total

266

281

131

84

58

36

132

988

 

(%)

26.92

28.44

13.26

8.50

5.87

3.64

13.36

 Â