Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish

Sjödin, Andreas; Svensson, Kerstin; Öhrman, Caroline; Ahlinder, Jon; Lindgren, Petter; Duodu, Samuel; Johansson, Anders; Colquhoun, Duncan J; Larsson, Pär; Forsman, Mats

doi:10.1186/1471-2164-13-268

Table 1 Strains sequenced in this study

From: Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish

Species	FSC ID	Alternate designation	Year isolated	Source	Location	NCBI ID
F. tularensis subsp. holarctica	FSC021	F0014, Tsuchiya	1958	Human lymph node	Fukushima prefecture, Japan	73369
F. tularensis subsp. holarctica	FSC208	3049UBG	1998	Human	Gävleborg county, Sweden	73467
F. tularensis subsp. holarctica	FSC539	2004-32-55	2004	Human blood	Örebro county, Sweden	73393
F. tularensis subsp. mediasiatica	FSC148	F0012, 240, 840	1982	Tick	Jambyl oblast, Kazakhstan	73379
F. tularensis subsp. tularensis	FSC054	F0010, Nevada 14	1953	Hare (Lepus californicus)	Nevada state, USA	73375
F. novicida	FSC159	F0052; fx2; 110	1995	Human blood	Texas state, USA	73383
F. novicida	FSC160	fx1; Houston, 2766	1991	Human blood	Texas state, USA	73385
F. novicida	FSC595	F58	2003	Human blood	Brazil/UK/Germany	73395
F. hispaniensis	FSC454	FhSp1	2003	Human blood	Elche, Spain	73391
F. noatunensis subsp. noatunensis	FDC178	NVI 7601, F/134/09A	2009	Atlantic cod (Gadus morhua)	Waterford, Ireland	73465
F. noatunensis subsp. noatunensis	FSC769	NVI 2005/50/F292-6C, NCIMB14265, LMG23800, DSM12596	2005	Atlantic cod (Gadus morhua)	Hordaland county, Norway	73397
F. noatunensis subsp. noatunensis	FSC772	NVI 5888, PQ1106	2006	Atlantic salmon (Salmo salar)	Lake Llanquihue, Chile	73449
F. noatunensis subsp. noatunensis	FSC774²	NVI 5865, GM2212	2004	Atlantic cod (Gadus morhua)	Rogaland county, Norway	73457
F. noatunensis subsp. noatunensis	FSC775²	DSM18777, GM2212	2004	Atlantic cod (Gadus morhua)	Rogaland county, Norway	73459
F. noatunensis subsp. noatunensis	FSC846	NVI 5518, SVA 74/04	2004	Atlantic cod (Gadus morhua)	Southern Skagerrak, Sweden	73463
F. noatunensis subsp. orientalis	FSC770	NVI 5409, PQ1104,	2006	Tilapia (Oreochromis sp.)	Costa Rica	73389
F. noatunensis subsp. orientalis	FSC771	Ehime-1, PQ1105	2001	Three-line grunt (Parapristipoma trilineatum)	Uwajima, Ehime prefecture, Japan	73447
Wolbachia persica	FSC845	ATCC VR - 331	1960	Soft tick (Oken) (Argas persicus) from buff-backed heron (Bubulcus ibis)	Nile Barrage Park, Cairo, Egypt	73171
F. philomiragia	FSC037	F0047, ATCC 25016	1960	Water	Bear River Refuge, Utah state, USA	73371
F. philomiragia	FSC039	F0049, ATCC 25018	1960	Water	Odgen Bay Refuge, Utah state, USA	73373
F. philomiragia	FSC145	F0046; CCUG 12603	1982	Human abscess	Göteborg, Sweden	73377
F. philomiragia	FSC154	Swiss	1979	Bone marrow, ascitic fluid	Zürich, Switzerland	73381
Fangia hongkongensis	FSC776	JCM14605	2004	Seawater at the outlet of a sand filter	Port Shelter, Hongkong, China	73461
Piscirickettsia salmonis	FSC773	NVI 5692	2006	Atlantic salmon (Salmo salar)	Møre & Romsdal county, Norway	73451

1 FDC178 was supplied by the Marine Institute, Oranmore, Ireland.
2 FSC774 was supplied by the National Veterinary Institue (NVI), Norway and FSC775 was requisitioned from the German Microorganism Collection (DSM).
3 FSC 160 (fx1) was supplied by VAMC, Houston, Texas. (Previously published FSC156 (fx1) was supplied by another lab.).
4 FSC539 from same patient as FSC529 in Svensson et al 2009.
Information about isolates sequenced in this study.

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ISSN: 1471-2164

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