Table 2 Differentially expressed miRNAs between lungs of infected and non-infected chickens (P < 0.05, Q < 0.05 and Ratio > 2) by Fisher’s exact test.
miRNA | Position on chromosomes | Reads in infected | Reads in non-infected | Ratio infected/non-infected (Normalized) |
|---|---|---|---|---|
gga-miR-1719 | chr12:842924-843012 | 109 | 0 | −1 |
gga-miR-1585 | chr19:8800028-8800118 | 65 | 0 | - |
gga-miR-1777 | chr28:2555498-2555592 | 24 | 0 | - |
gga-miR-460b-5p | chr4:26873962687485 | 23 | 0 | - |
gga-miR-1716 | chr5:60283968-60284072 | 22 | 0 | - |
gga-miR-3537 | chr6:18024717-18024793 | 19 | 0 | - |
gga-miR-1718 | chr5:33777662-33777741 | 18 | 0 | - |
gga-miR-1354 | chr4: 3970359-3970439 | 18 | 0 | - |
gga-miR-1792 | chr3:7712006-7712104 | 16 | 0 | - |
gga-miR-3535 | chr9:16372628-16372709 | 15 | 0 | - |
gga-miR-1610 | chr8:12398260-12398347 | 15 | 0 | - |
gga-miR-1631 | chrZ:15789429-15789502 | 13 | 0 | - |
gga-miR-1805-5p | chr1:135141607-135141690 | 12 | 0 | - |
gga-miR-1604 | chr1:312691-312787 | 12 | 0 | - |
gga-miR-153 | chr2:8765687-8765773 | 12 | 0 | - |
gga-miR-1593 | chr1:61691788-61691877 | 12 | 0 | - |
gga-miR-3538-1 | chrUn:44040736-44040810 | 10 | 0 | - |
gga-miR-3538-2 | chr1:52608155-52608229 | 10 | 0 | - |
gga-miR-1723 | chr2:41377973-41378078 | 10 | 0 | - |
gga-miR-1584 | chrZ:18238506-18238570 | 10 | 0 | - |
gga-miR-1754 | chr9:25014275-25014342 | 9 | 0 | - |
gga-miR-3528 | chr17:8404342-8404438 | 9 | 0 | - |
gga-miR-1644 | chr14:8284308-8284393 | 8 | 0 | - |
gga-miR-1745-1 | chr24:5271413-5271449 | 8 | 0 | - |
gga-miR-1770 | chr2:151547087-151547183 | 7 | 0 | - |
gga-miR-1809 | chr8:23417849-23417956 | 7 | 0 | - |
gga-miR-34a | chr21:3251514-3251622 | 7 | 0 | - |
gga-miR-1681 | chr2:96361604-96361703 | 6 | 0 | - |
gga-miR-1692 | chr9:23692587-23692675 | 6 | 0 | - |
gga-miR-1805-3p | chr1:135141607-135141690 | 6 | 0 | - |
gga-miR-1463 | chr5:11171642-1171751 | 6 | 0 | - |
gga-miR-1560 | chr11:20587431-20587444 | 6 | 0 | - |
gga-miR-1700 | chr1:140966218-140966317 | 6 | 0 | - |
gga-miR-1712 | chr3:81937337-81937409 | 6 | 0 | - |
gga-miR-1772 | chr6:11560478-11560546 | 6 | 0 | - |
gga-miR-1713 | chr7:17384289-17384387 | 6 | 0 | - |
gga-miR-1781 | chr14:3330762-3330854 | 6 | 0 | - |
gga-miR-1551 | chr14:5233361-5233450 | 5 | 0 | - |
gga-miR-2127 | chr1:170154815-170154918 | 5 | 0 | - |
gga-miR-3527 | chrMT:8673-8781 | 5 | 0 | - |
gga-miR-3533 | chrUn:20438961-20439044 | 5 | 0 | - |
gga-miR-3536 | chr25:1478485-1478562 | 5 | 0 | - |
gga-miR-1785 | chr11:20641236-20641337 | 5 | 0 | - |
gga-miR-1594 | chrZ:75709-75799 | 473 | 17 | 34.54 |
gga-miR-1599 | chr7: 25926968-25927029 | 184 | 7 | 32.64 |
gga-miR-1767 | chr3:44732913-44732971 | 71 | 7 | 12.59 |
gga-miR-1662 | chr2:1721334-1721406 | 140 | 17 | 10.23 |
gga-miR-202 | chr6:22813068-22813156 | 40 | 5 | 9.93 |
gga-miR-122-1 | chrZ: 649337-649413 | 1952 | 279 | 8.69 |
gga-miR-1766-1 | chr2:77319215-77319307 | 42 | 6 | 8.69 |
gga-miR-122-2 | chrUn:12066796-12066872 | 1685 | 258 | 8.11 |
gga-miR-32 | chr2:86506451-86506520 | 45 | 7 | 7.98 |
gga-miR-204-2 | chr10:6651274-6651374 | 12 | 2 | 7.45 |
gga-miR-211 | chr28:1784394-1784467 | 12 | 2 | 7.45 |
gga-miR-451 | chr19: 5823968-5824036 | 207487 | 35518 | 7.25 |
gga-miR-19b | chr1: 152248183-152248269 | 955 | 181 | 6.55 |
gga-miR-1694 | chr7:5419755-5419852 | 26 | 5 | 6.46 |
gga-miR-1729 | chr15:769596-769666 | 4292 | 843 | 6.32 |
gga-miR-1611 | chr10:16350472-16350560 | 167 | 38 | 5.46 |
gga-miR-2188 | chr22:2684926-2685094 | 7045 | 1800 | 4.86 |
gga-miR-18a | chr1:152248626-152248718 | 88 | 23 | 4.75 |
gga-miR-1581 | chr1:51158137-51158222 | 18 | 5 | 4.67 |
gga-miR-193b | chr14: 759453-759535 | 159 | 47 | 4.20 |
gga-miR-1451 | chr3:78710207-78710207 | 129 | 42 | 3.81 |
gga-miR-1587 | chr19:1782806-1782901 | 15 | 5 | 3.72 |
gga-miR-1572 | chr12:9668820-9668820 | 182 | 61 | 3.70 |
gga-miR-3523 | chr13:8968882-8969047 | 65 | 22 | 3.67 |
gga-miR-18b | chr4:3970228-3970311 | 70 | 24 | 3.62 |
gga-miR-155 | chr1:105930213-105930275 | 40 | 14 | 3.55 |
gga-miR-454 | chr15:399833-399953 | 31 | 11 | 3.50 |
gga-miR-15a | chr1: 173700493-173700575 | 2413 | 861 | 3.48 |
gga-miR-144 | chr19: 5824123-5824207 | 13216 | 4727 | 3.47 |
gga-miR-551 | chr9:21966405-21966517 | 25 | 9 | 3.45 |
gga-miR-218-1 | chr4:77774698-77774806 | 11 | 4 | 3.41 |
gga-miR-218-2 | chr13:4322806-4322954 | 11 | 4 | 3.41 |
gga-miR-193a | chr18: 6423770-6423846 | 1230 | 461 | 3.31 |
gga-miR-223 | chr4: 232949-233048 | 1842 | 717 | 3.19 |
gga-miR-30b | chr2:148331598-148331684 | 165 | 67 | 3.06 |
gga-miR-214 | chr8:4739550-4739659 | 74 | 32 | 2.87 |
gga-miR-142-3p | chr19: 496983-497070 | 1055 | 461 | 2.84 |
gga-miR-142-5p | chr19: 496983-497070 | 1100 | 481 | 2.84 |
gga-miR-106 | chr4: 3970359-3970439 | 897 | 394 | 2.83 |
gga-miR-16-2 | chr9:23742791-23742884 | 1952 | 856 | 2.83 |
gga-miR-16-1 | chr1: 173700351-173700434 | 2724 | 1206 | 2.80 |
gga-miR-1579 | chr6:3677284-3677350 | 164 | 73 | 2.79 |
gga-miR-20a | chr1: 152248306-152248403 | 426 | 190 | 2.78 |
gga-miR-1416 | chrZ: 34596479-34596567 | 25 | 12 | 2.59 |
gga-miR-146a | chr13: 7555593- 7555691 | 1331 | 639 | 2.59 |
gga-miR-1798 | chr20:9654914-9655009 | 36 | 18 | 2.48 |
gga-miR-3531 | chr23:417154-417240 | 22 | 11 | 2.48 |
gga-miR-20b | chr4:3970047-3970131 | 734 | 378 | 2.41 |
gga-miR-1434 | chr28:1055204-1055280 | 89 | 46 | 2.40 |
gga-miR-29a | chr1: 3236329-3236417 | 205 | 108 | 2.36 |
gga-miR-29c | chr26: 2511658-2511746 | 205 | 108 | 2.36 |
gga-miR-24 | chrZ:41158175-41158242 | 10052 | 5343 | 2.34 |
gga-miR-7b | chrUn:38163821-38163930 | 251 | 134 | 2.33 |
gga-miR-17-5p | chr1:152248781-152248865 | 1831 | 982 | 2.32 |
gga-miR-15c | chr4:4049055-4049130 | 1002 | 538 | 2.31 |
gga-miR-1763 | chr14:12895655-12895720 | 147 | 80 | 2.28 |
gga-miR-23b | chrZ:41157406-41157491 | 15783 | 8718 | 2.25 |
gga-miR-147-1 | chr1:12334922-12334991 | 92 | 52 | 2.20 |
gga-miR-17-3p | chr1:152248781-152248865 | 1480 | 853 | 2.15 |
gga-miR-1800 | chr5:47604931-47605006 | 98 | 58 | 2.10 |
gga-miR-458 | chr13:8034158-8034273 | 69 | 41 | 2.09 |
gga-miR-92 | chr1:152248070-152248417 | 13819 | 8291 | 2.07 |
gga-miR-7-1 | chrZ:39554766-39554874 | 81 | 49 | 2.05 |
gga-miR-1705 | chr17:9510405-9510494 | 26 | 16 | 2.02 |
gga-miR-7-2 | chr10:14823525-14823623 | 71 | 44 | 2.00 |
gga-miR-1306 | chr15:1296916-1296984 | 20 | 62 | 0.40 |
gga-miR-206 | chr3: 110390439-110390514 | 28 | 98 | 0.35 |
gga-miR-301 | chr15:406313-406405 | 5 | 19 | 0.33 |
gga-miR-1638 | chr5:58712377-58712463 | 5 | 23 | 0.27 |
gga-miR-187 | chr2:85892470-85892555 | 6 | 33 | 0.23 |
gga-miR-449b | chrZ: 16040763-16040856 | 0 | 23 | 02 |
gga-miR-460a | chr2:3583690-3583779 | 0 | 11 | 0 |
gga-miR-1765 | chr18:5840573-5840677 | 0 | 9 | 0 |
gga-miR-216c | chr3:288216-288301 | 0 | 7 | 0 |
gga-miR-1607 | chr2: 45452355-45452433 | 0 | 6 | 0 |
gga-miR-1555 | chr1:149148336-149148421 | 0 | 6 | 0 |
gga-miR-1c | chr7:36625855-36625928 | 0 | 6 | 0 |
gga-miR-3529 | chr10:14823529-14823619 | 0 | 6 | 0 |