Table 6 SNPs variable within and between different groups of botanical varieties selected for validation
From: Transcriptome sequencing for SNP discovery across Cucumis melo
Polymorphic between1 | Total SNPs | SNPs with MAF <0.7 | Selected | Validated | |||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | All | No Is60 | All | No Is60 | Â | Â | ||
Monomorphic Within | Monomorphic Within | Â | CS60 MAF1 | CS60 MAF0.7 | Â | CS60 MAF1 | CS60 MAF0.7 | Â | Â |
Piel de Sapo (8) African agrestis (1) | conomon (3) | 13,168 | 4,000 | 6,240 | 5,361 | 1,659 | 2,690 | 34 | 33 (97%) |
Piel de Sapo (8) conomon (3) | African agrestis (1) | 15,261 | 4,226 | 7,095 | 6,724 | 1,894 | 3,322 | 24 | 24 (100%) |
cantalupensis (5) conomon (3) | African agrestis (1) | 13,168 | 3,559 | 5,972 | 5,052 | 1,354 | 2,284 | 12 | 12 (100%) |
momordica (4) Piel de Sapo (8) inodorus (7) | African agrestis (1)conomon (3) | 5,822 | 1,739 | 2,265 | 2,848 | 879 | 1,139 | 15 | 14 (93%) |
momordica (4) cantalupensis (5) | African agrestis (1)conomon (3) | 5,102 | 1,544 | 2,006 | 2,305 | 744 | 954 | 24 | 24 (100%) |
Polymorphic in Piel de Sapo | 43,363 | Â | Â | 1,305 | Â | Â | 19 | 12 (63%) | |
Polymorphic in all groups | 668 | 9 | 431 | 3 | 0 | 0 | 16 | 13 (81%) | |