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Table 3 Electronic Northern of high confidence new miRNAs (class I) expression profiles in different libraries

From: Computational identification and analysis of novel sugarcane microRNAs

ID miRNA miRNA* Eletronic Northern
Biotic stress Drought stress Salt stress
CT AA T 0h T 24h S 0h S 24h 0h 1h 6h 24h
sof-miR-Seq07 AAAACGTCTTATAATTTGGAG CAAATTATAAGATGTTTTGGC 18.06 23.17 - - - - - - - -
sof-miR-Seq15 AAAATTATCGTAAATAGAGGTGGC TAGCCACTTTGAGTTACGATAATT - 8.77 2.78 6.89 4.02 7.60 - - - -
sof-miR-Seq42 AAAGTTGTGTATCTAGAAAAG TGGCTTTTCTAGATACATAGC 67.25 37.58 - - - - 2.08 - - -
sof-miR-Seq143 AATTCGTCGAACAGCTGCAGC ACGCGAGCTGTTTGGCGAATT 295.17 1436.67 - - - - - - - -
sof-miR-Seq151 ACAAGTTTCGTGATTTTTGGA CGAAAATCACGAAACTTGTCG 23.04 12.53 - - - - - - 1.24 1.12
sof-miR-Seq155 ACACATGTGGATTGAGATGAATAC TTCACATCAATCCACATATGTTGG 15.57 27.56 - - - - - - - -
sof-miR-Seq171 ACTATGTATCTAGAAAAGCTA TTTCTAGGTACATAGCTTTTG - - 2.47 1.80 1.72 - - - - 0.80
sof-miR-Seq183 ACTTACAGTTTGGAACGGAGG TCTGTTCCAAATTGTAAGTCG - 5.64 - - - - - - - -
sof-miR-Seq253 AGTCCCGAAACCTTAGTCCCGGCT GAACCGGGACTAAAGGTGGGACAT 21.80 6.26 - - - - - 6.22 - 5.93
sof-miR-Seq313 ATGCCTTATAATTTGGGATGGAGA CTCCATCCTAAATTATAAGACATT - - - - - - - - 0.77 -
sof-miR-Seq345 ATTTGACTGACACGGATTCTAGGA TAGAGTTGTCCTAAGTCAAACTTT 3.74 - - - - - - - - -
sof-miR-Seq375 CCGGGGCCAGATCTCAGAAGC TTCTGACTTCTGGCCCCTGCT - - - - - - - - - 2.24
sof-miR-Seq376 CCTGTTTGGATCAGCCAAGGC CTAGCTGATCCAAACAGGCCC 13.08 9.39 - - - - - - - -
sof-miR-Seq393 CTAGCATGTTCCTCCTAAGAG TTCTTGGGAGGAGCATGCTAG - 5.01 - - - - - - - -
sof-miR-Seq394 CTCCGTCCTAATATATAAGGC CTTATATACTAGGACGGAGGG 4.36 - - - - - - - - -
sof-miR-Seq409 GAAACGAATCTTTTAAGTCTAATT AACTAGACTCAAAAGATTCATCTC 3.11 - - - - - - - - -
sof-miR-Seq468 GATTAGTCACGATTAGTCGTCCGA AGATCGGACGACTAATCGCGATTA - - - - - - - - 0.77 -
sof-miR-Seq488 GCGTGCAAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA - - 572.49 482.28 497.41 570.24 - - - -
sof-miR-Seq501 GGCATGGGAACATGTAGGAAGG TTCCTGATGCCTCCCATGCCTA 11.21 - - - - - - - - -
sof-miR-Seq504 GGGAGCAATTCGTCGAACAGC AGCTGTTCGACGAATGCCTCC 123.30 - - - - - - - - -
sof-miR-Seq509 GGGCCCAAATAGCAAGTGTTGTGA CTCACAACACTTGCTATTTGGG - - - - - - 1.48 - 2.01 0.96
sof-miR-Seq511 GGGCGGTCACCTTGGCTAGC TAGCCAAGGATGACTTGCCT 132.64 - - - - - - - 26.48 -
sof-miR-Seq513 GGGGGCGGACTGGGAACACAT TGTGTTCTCAGGTCGCCCCCG - - - - - - - 3404.36 - -
sof-miR-Seq536 GTGCGGTTCTCCTCTGGCATG TGCCAAAGGAGAATTGCCCTG - - - - - - 1.93 - - -
sof-miR-Seq538 GTGGCAGTAGAATTAATGAAGGGA TTCTATCTCTATTAATTGTGTTGC - 12.53 - - - - - 1.62 - -
sof-miR-Seq565 GTTTTTCTCGCCGGGTGAGAAGGC ATTCTCACTTGGGCGACGGAAAGG - 3.13 - - - - - - - -
sof-miR-Seq568 TAACAAGTTTAGGGATCTAGA TTTTGGGTCCCTAAACTTGTT - - 2.47 3.30 - - - - - 0.80
sof-miR-Seq587 TAGCATGTTCCTCCTAAGAGC TTCTTGGGAGGAGCATGCTAG 18.68 - - - - - - - - -
sof-miR-Seq594 TATCTAGAAAAGCTAAAACGT GATGTTTTGGGTTTTCTAGAT - - - - - - 0.74 - - -
sof-miR-Seq598 TATTTGTGGACTCATGGACAT GTCCGTGAGTCCACAAATAGG 3.11 3.13 - - - - 1.78 - 2.48 1.76
sof-miR-Seq610 TCCATTCCAAATTGTAAGATG GTCTTATAATTTGGAATGGAG 30.51 6.89 - - - - - - - -
sof-miR-Seq648 TGGATGTACCAAAAAAGTCAAAGC GTCGCTTTGACTTTTTTGGTACAT - - - - - - - 3.24 - -
sof-miR-Seq656 TGGGCGGTCACCTTGGCTAGC TAGCCAAGGATGACTTGCCTA - 65.13 27.51 38.64 72.99 62.81 - - - -
sof-miR-Seq670 TGTTGAGGCTGGAGCGAAACTCGG CAAGTTTGGTTTTGGTAATTAATG - 12.53 - - - - - - - -
sof-miR-Seq678 TTAGCGTCAAGAGACGAACACACT AAGTGTGTTCCTCTATTTGACGCT - 3.76 - - - - 4.74 6.49 2.79 7.53
sof-miR-Seq700 TTGTGAGAGAAAAATACTGTTGGC AACGAACAGTATTTTTCTCTTACA - 16.28 - - - - - - - -
sof-miR-Seq720 TTTTTGGTACATTGAATTTGC AATTCGATGTACCAAAAAAGT - 11.27 - - - - - - - -
  1. ID: identification of sequences; CT: non inoculated plants; AA: under A. avenae infection; T 0 h and T 24 h: tolerant genotypes in control and drought stress conditions, respectively; S 0 h and S 24 h: sensitive genotypes in control and drought stress conditions, respectively; 0 h: plant without salt stress; 1 h, 6 h, 24 h: plants after salt treatment
  2. The number of mature miRNA reads were normalized by transcripts per million. The mature miRNA and miRNA* sequences were also shown.