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Table 4 Predicted sugarcane and sorghum mRNA targets for the high confidence novel miRNAs

From: Computational identification and analysis of novel sugarcane microRNAs

miRNA ID Sugarcane targetsa Sorghum targetsb
sof-miR-Seq7 TC130098,TC151912,TC148492,TC113248,TC152641,TC150124,TC132416,TC114872,TC140938,TC115982,TC120001 +
sof-miR-Seq15 No TC found +
sof-miR-Seq42 TC153375,TC149921,TC131074,TC139079 +
sof-miR-Seq143 No TC found +
sof-miR-Seq151 TC153350,TC116972,TC137677 +
sof-miR-Seq155 TC152159,TC125281,TC149817,TC136354 +
sof-miR-Seq171 TC149921,TC132416,TC152095,TC148248 +
sof-miR-Seq183 TC149944,TC132416 +
sof-miR-Seq253 No target found +
sof-miR-Seq313 TC154059,TC139862,TC140501 +
sof-miR-Seq345 No TC found -
sof-miR-Seq375 TC136870,TC153496,TC134975 +
sof-miR-Seq376 No TC found -
sof-miR-Seq393 TC152280,TC116268 +
sof-miR-Seq394 No TC found -
sof-miR-Seq409 TC129500,TC154465,TC152078,TC154496,TC150491,TC154742,TC131475,TC116420,TC142998,TC146859,TC134345,TC133965,TC153566,TC149558,TC149819,TC154535,TC150277 +
  TC129500,TC154465,TC152078,TC154496,TC150491,TC154742,TC131475,TC116420,TC142998,TC146859,TC134345,TC133965,TC153566,TC149558,TC149819,TC154535,TC150277  
sof-miR-Seq468 TC153570,TC141767 +
sof-miR-Seq488 TC152925 -
sof-miR-Seq501 TC151370 -
sof-miR-Seq504 TC126404 +
sof-miR-Seq509 No target found +
sof-miR-Seq511 TC124067,TC118309 +
sof-miR-Seq513 TC141387 -
sof-miR-Seq536 TC139920,TC130151,TC120175 +
sof-miR-Seq538 No TC found -
sof-miR-Seq565 No TC found -
sof-miR-Seq568 No target found +
sof-miR-Seq587 TC139519,TC152280 +
sof-miR-Seq594 TC115982,TC149921,TC113248,TC140938,TC132416,TC148248,TC140476 +
sof-miR-Seq598 TC124210 +
sof-miR-Seq610 TC122224,TC140470,TC145127,TC142562,TC120001,TC150124 +
sof-miR-Seq648 TC137080,TC134144,TC117196 +
sof-miR-Seq656 No TC found +
sof-miR-Seq670 TC138461,TC153815,TC149322,TC146441,TC153901,TC142328,TC154437,TC154455,TC125410 +
sof-miR-Seq678 TC133894,TC129132 +
sof-miR-Seq700 TC152242,TC146024,TC117281,TC152372,TC146587,TC153355,TC154348,TC148421,TC128182,TC148979,TC120001,TC117481,TC134335,TC113000,TC138157,TC130788,TC129900 +
sof-miR-Seq720 TC125467,TC129883,TC145851,TC144060 +
  1. a Identification of sugarcane targets. miRNAs that only have singletons as targets were identified by No TC found. MiRNAs that did not have predicted targets were identified by No target found.
  2. b Plus and minus signals indicate presence or absence (respectively) of sorghum genes containing conserved miRNA recognition sites.