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Table 1 N. nervosa transcriptome annotation summary

From: Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery

  Number of sequences
  Isotigs (3,005) Singletons (21,881) Combined set (24,886)
Viridiplantae-NR
Sequences with positive BLAST matches 2,762 (92%) 12,735 (58%) 15,497 (62%)
Sequences annotated with Gene Ontology (GO) terms 2,238 (74%) 9,596 (44%) 11,834 (47%)
Sequences without detectable BLAST matches 243 (8%) 9,146 (42%) 9,389 (38%)
Sequences assigned to know Enzyme Commission category 931 (31%) 1,424 (6%) 2,355 (9%)
Fagaceae
Sequences with positive BLAST matches 2,923 (97%) 17,515 (80%) 20,438 (82%)
Sequences without detectable BLAST matches 82 (3%) 4,365 (20%) 4,447 (18%)
Sequences annotated with Gene Ontology (GO) terms (“novel genes”) 12 (0.4%) 490 (2%) 502 (2%)
  1. Numbers and percentages of 454 sequences in the assembled isotigs, singletons and unigenes with significant matches against NCBI NR proteins Viridiplantae filtered database and Fagaceae unigenes.