Table 1 N. nervosa transcriptome annotation summary
Number of sequences | |||
|---|---|---|---|
Isotigs (3,005) | Singletons (21,881) | Combined set (24,886) | |
Viridiplantae-NR | |||
Sequences with positive BLAST matches | 2,762 (92%) | 12,735 (58%) | 15,497 (62%) |
Sequences annotated with Gene Ontology (GO) terms | 2,238 (74%) | 9,596 (44%) | 11,834 (47%) |
Sequences without detectable BLAST matches | 243 (8%) | 9,146 (42%) | 9,389 (38%) |
Sequences assigned to know Enzyme Commission category | 931 (31%) | 1,424 (6%) | 2,355 (9%) |
Fagaceae | |||
Sequences with positive BLAST matches | 2,923 (97%) | 17,515 (80%) | 20,438 (82%) |
Sequences without detectable BLAST matches | 82 (3%) | 4,365 (20%) | 4,447 (18%) |
Sequences annotated with Gene Ontology (GO) terms (“novel genes”) | 12 (0.4%) | 490 (2%) | 502 (2%) |