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Table 3 Number of di-, tri-, tetra-, and pentanucleotide simple sequence repeats (SSRs) identified in 1,417,410 reads obtained by 454 sequencing

From: Transcriptome analysis of carnation (Dianthus caryophyllus L.) based on next-generation sequencing technology

Dinucleotide repeat Number of dinucleotide SSRs %
AC/GT 150 15
AG/CT 321 33
AT/TA 170 17
CA/TG 81 8
GA/TC 250 26
Total 972 100
Trinucleotide repeat Number of trinucleotide SSRs %
AAG/CTT 616 6
AAT/ATT 652 7
AGA/TCT 787 8
ATC/GAT 614 6
CAA/TTG 811 8
GAA/TTC 871 9
TCA/TGA 768 8
Other trinucleotide repeats 4613 47
(<5% of each one)   
Total 9732 100
Tetranucleotide repeat Number of tetranucleotide SSRs %
AAAT/ATTT 176 7
AATC/GATT 165 7
ATTA/TAAT 145 6
ATTG/CAAT 121 5
TCAA/TTGA 287 12
Other tetranucleotide repeats 1498 63
(<5% of each one)   
Total 2392 100
Pentanucleotide repeat Number of pentanucleotide SSRs %
AAAAT/ATTTT 401 9
Other pentanucleotide repeats 3865 91
(<5% of each one)   
Total 4266 100
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BMC Genomics

ISSN: 1471-2164

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