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Table 1 Overrepresented functional GO terms of MS-specific/preferential genes

From: Identification of genes specifically or preferentially expressed in maize silk reveals similarity and diversity in transcript abundance of different dry stigmas

GO Terma Term typea Query itemb Query totalc Bg itemd Bg totale P-valuef FDRg
amino acid transport P 10 900 52 39203 2.80E-07 0.00021
protein amino acid phosphorylation P 93 900 2387 39203 2.70E-06 0.00082
oligopeptide transport P 12 900 105 39203 6.10E-06 0.0011
fatty acid metabolic process P 14 900 187 39203 0.00013 0.014
lipid transport P 10 900 104 39203 0.00015 0.014
cell wall macromolecule catabolic process P 8 900 73 39203 0.00028 0.022
chitin catabolic process P 6 900 43 39203 0.00044 0.03
drug transport P 11 900 154 39203 0.00097 0.05
integral to membrane C 75 900 2156 39203 0.00055 0.029
peroxisome C 5 900 33 39203 0.0009 0.029
protein serine/threonine kinase activity F 92 900 2248 39203 4.40E-07 0.00013
monooxygenase activity F 33 900 553 39203 1.30E-06 0.00029
heme binding F 43 900 876 39203 6.20E-06 0.0007
acyltransferase activity F 16 900 187 39203 8.80E-06 0.0008
amino acid transmembrane transporter activity F 6 900 28 39203 3.60E-05 0.0024
electron carrier activity F 42 900 914 39203 3.50E-05 0.0024
transferase activity, transferring hexosyl groups F 28 900 542 39203 9.40E-05 0.0053
sugar binding F 12 900 150 39203 0.00021 0.0095
secondary active transmembrane transporter activity F 22 900 421 39203 0.00042 0.018
chitinase activity F 6 900 43 39203 0.00044 0.018
lipid binding F 13 900 202 39203 0.00093 0.035
drug transmembrane transporter activity F 11 900 154 39203 0.00097 0.035
  1. aGO term classifications: P, Biological Process; C, Cellular Component; F, Molecular Function.
  2. bQuery item number in MS preferential expressed genes.
  3. cTotal annotated query item number in agriGO.
  4. dQuery item number in maize genome version 5a.
  5. eTotal annotated item number in maize genome version 5a.
  6. fDetermined by Fisher exact test.
  7. gDetermined by Benjamini–Hochberg–Yekutieli procedure.
  8. GO terms with P-value < 0.001 and FDR ≤ 0.05 were regarded as overrepresented terms.