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Table 2 Overview of the functional categories for the six sub-clusters of hierarchical clustering

From: Distinct and overlapping gene regulatory networks in BMP- and HDAC-controlled cell fate determination in the embryonic forebrain

Gene cluster: TSA up-regulated

Gene cluster: TSA down-regulated

·

antigen processing

·

chromosome organization

·

metabolism

·

nucleus

·

membrane, adhesion

·

transcription

·

cell part

·

metabolism

  

·

protein modification

Gene cluster: Bmp2 up-regulated

Gene cluster: Bmp2 down-regulated

·

cell communication

·

cell communication

·

differentiation, development

·

signal transduction

·

membrane, extracellular matrix

  

Gene cluster: Bmp2, TSA up-regulated

Gene cluster: Bmp2, TSA down-regulated

·

adhesion, extracellular matrix

·

differentiation, development

  

·

neurogenesis