Table 1 SNP mining results.
From: RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
Filtering criteria | RAD-contigs count | SNPs count |
|---|---|---|
Total SNPs mining (CcRAD1) | 12,068 | 33,784 |
"Fully informative" RAD loci (CcRAD2) | 7,478 | 17,450 |
Putative testcross markers (CcRAD2) | 6,289 | 8,530 |
   "Romanesco C3" testcross over "Altilis 41" | 724 | 883 |
   "Altilis 41" testcross over "Romanesco C3" | 1,541 | 2,210 |
   "Romanesco C3" testcross over "Creta 4" | 778 | 937 |
   "Creta 4" testcross over "Romanesco C3" | 3,246 | 4,500 |
Common intercross markers (CcRAD2) | 117 | 136 |