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Table 1 Data description of BS-Seq reads for the four rice samples

From: Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

Sample

Japonica

Indica

O. rufipogon

O. nivara

Raw reads number/data production (Gb)

320,730,854/16.2

170,784,798/7.5

171,346,432/7.5

203,796,688/9.0

Effective reads number/data production (Gb)

175,749,760/9.2

58,423,521/2.6

68,773,618/3.0

81,784,095/3.6

Genome coverage

91%

76%

78%

77%

Average read depth per base per strand

13.5 ×

4.54 ×

5.17 ×

6.25×